RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 RPF1Q9H9Y2 349 aaKnown RBP13.14□□□□□ -0.31
LIG1-221ENST00000613670 FAM155BO75949 473 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 P4HA1P13674 534 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 CDH8P55286 799 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 MAP7D1Q3KQU3 841 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 C1orf220Q5T0J3 134 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 TTC39BQ5VTQ0 682 aaPredicted RBP13.14□□□□□ -0.31
LIG1-221ENST00000613670 PRAMEF18Q5VWM3 479 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 ANO7Q6IWH7 933 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 NCAPG2Q86XI2 1143 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 EFCAB3Q8N7B9 438 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 MYH11P35749 1972 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 NEMP1O14524 444 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 USP1O94782 785 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 CCNE2O96020 404 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 TYK2P29597 1187 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 DSG1Q02413 1049 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 TAP1Q03518 808 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 CCDC15Q0P6D6 951 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 ZACNQ401N2 412 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 DNAL1Q4LDG9 190 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 ZBTB41Q5SVQ8 909 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 FNBP1LQ5T0N5 605 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 UNC45BQ8IWX7 931 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 C12orf56Q8IXR9 622 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 PYDC1Q8WXC3 89 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 ANKRD27Q96NW4 1050 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 WASF2Q9Y6W5 498 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 ADAMTSL3P82987 1691 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 PLCH1Q4KWH8 1693 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 E7ENQ6 273 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 UNGP13051 313 aaPredicted RBP13.13□□□□□ -0.31
LIG1-221ENST00000613670 RPL10AP62906 217 aaKnown RBP13.13□□□□□ -0.31
LIG1-221ENST00000613670 MRPS9P82933 396 aaKnown RBP13.13□□□□□ -0.31
LIG1-221ENST00000613670 RHBDF2Q6PJF5 856 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 ASAP3Q8TDY4 903 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 C10orf82Q8WW14 230 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 ZNF184Q99676 751 aaPredicted RBP13.13□□□□□ -0.31
LIG1-221ENST00000613670 hCG_1818297A0A087WSY0 165 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 CCDC78A2IDD5 438 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 CCNB1P14635 433 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 IVDP26440 423 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 HMGCS2P54868 508 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 BTKQ06187 659 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 SGSM1Q2NKQ1 1148 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 ACSBG2Q5FVE4 666 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 SLC26A11Q86WA9 606 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 CEP70Q8NHQ1 597 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 LRGUKQ96M69 825 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 MRPL4Q9BYD3 311 aaKnown RBP13.13□□□□□ -0.31
LIG1-221ENST00000613670 PACSIN3Q9UKS6 424 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 MYPNQ86TC9 1320 aa13.13□□□□□ -0.31
LIG1-221ENST00000613670 PRPF4O43172 522 aaKnown RBP eCLIP13.12□□□□□ -0.311e-6■■■■□ 23.6
LIG1-221ENST00000613670 WFS1O76024 890 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 ATP6V1B1P15313 513 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 NCKAP1LP55160 1127 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 BST1Q10588 318 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 MAP3K21Q5TCX8 1036 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 C16orf46Q6P387 395 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 MON1BQ7L1V2 547 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 APOPT1Q96IL0 206 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 TRIM56Q9BRZ2 755 aaKnown RBP13.12□□□□□ -0.31
LIG1-221ENST00000613670 AIM2O14862 343 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 WDR46O15213 610 aaKnown RBP13.12□□□□□ -0.31
LIG1-221ENST00000613670 ZBTB48P10074 688 aaPredicted RBP13.12□□□□□ -0.31
LIG1-221ENST00000613670 ETS2P15036 469 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 SDC4P31431 198 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 MMRN1Q13201 1228 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 CGB2Q6NT52 195 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.12□□□□□ -0.31
LIG1-221ENST00000613670 SESTD1Q86VW0 696 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 TMPRSS6Q8IU80 811 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 C7orf43Q8WVR3 580 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 CRYGNQ8WXF5 182 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 GJD4Q96KN9 370 aaPredicted RBP13.12□□□□□ -0.31
LIG1-221ENST00000613670 MFSD14AQ96MC6 490 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 ACSS3Q9H6R3 686 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 C17orf75Q9HAS0 396 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 PXMP2Q9NR77 195 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 DNAJC16Q9Y2G8 782 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 ADCY3O60266 1144 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 CSDE1O75534 798 aaKnown RBP13.12□□□□□ -0.31
LIG1-221ENST00000613670 DGKIO75912 1065 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 HIRAP54198 1017 aaPredicted RBP13.12□□□□□ -0.31
LIG1-221ENST00000613670 TTLL12Q14166 644 aaPredicted RBP13.12□□□□□ -0.31
LIG1-221ENST00000613670 CIAPIN1Q6FI81 312 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 CCNJLQ8IV13 435 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 CCDC60Q8IWA6 550 aaPredicted RBP13.12□□□□□ -0.31
LIG1-221ENST00000613670 ICA1LQ8NDH6 482 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 ZNF483Q8TF39 744 aaPredicted RBP13.12□□□□□ -0.31
LIG1-221ENST00000613670 VCPIP1Q96JH7 1222 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 CLMNQ96JQ2 1002 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 Q9H521 79 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 TAS2R1Q9NYW7 299 aa13.12□□□□□ -0.31
LIG1-221ENST00000613670 SP100P23497 879 aaPredicted RBP13.11□□□□□ -0.31
LIG1-221ENST00000613670 GDF10P55107 478 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 SLC25A3Q00325 362 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 FAM160B1Q5W0V3 765 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 RINLQ6ZS11 566 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 NMD3Q96D46 503 aaKnown RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms