RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 ZNF558Q96NG5 402 aa21.23■□□□□ 0.99
UPF1-207ENST00000599848 NEXMIFQ5QGS0 1516 aa21.23■□□□□ 0.99
UPF1-207ENST00000599848 RRM1P23921 792 aa21.23■□□□□ 0.99
UPF1-207ENST00000599848 PRIM2P49643 509 aa21.23■□□□□ 0.99
UPF1-207ENST00000599848 EXOSC10Q01780 885 aaKnown RBP21.23■□□□□ 0.99
UPF1-207ENST00000599848 TLK2Q86UE8 772 aa21.23■□□□□ 0.99
UPF1-207ENST00000599848 SYN2Q92777 582 aaPredicted RBP21.23■□□□□ 0.99
UPF1-207ENST00000599848 ACSF2Q96CM8 615 aaPredicted RBP21.23■□□□□ 0.99
UPF1-207ENST00000599848 KLK14Q9P0G3 267 aa21.23■□□□□ 0.99
UPF1-207ENST00000599848 PDE2AO00408 941 aaPredicted RBP21.23■□□□□ 0.99
UPF1-207ENST00000599848 METTL5Q9NRN9 209 aaKnown RBP21.23■□□□□ 0.99
UPF1-207ENST00000599848 PYCARDQ9ULZ3 195 aa21.23■□□□□ 0.99
UPF1-207ENST00000599848 KLHL2O95198 593 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 GRIK4Q16099 956 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 C4orf19Q8IY42 314 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 WEE2P0C1S8 567 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 NFRKBQ6P4R8 1299 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 POTEAQ6S8J7 498 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 EXD1Q8NHP7 514 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 KCNK16Q96T55 309 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 DDX47Q9H0S4 455 aaKnown RBP21.22■□□□□ 0.99
UPF1-207ENST00000599848 SMYD3Q9H7B4 428 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 APPL1Q9UKG1 709 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 RAD54BQ9Y620 910 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 LSM8O95777 96 aaKnown RBP21.22■□□□□ 0.99
UPF1-207ENST00000599848 IGSF6O95976 241 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 PSEN2P49810 448 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 NAB2Q15742 525 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 DNAL1Q4LDG9 190 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 ZCCHC8Q6NZY4 707 aaKnown RBP21.22■□□□□ 0.99
UPF1-207ENST00000599848 ZDHHC17Q8IUH5 632 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 SUSD6Q92537 303 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 TMEM117Q9H0C3 514 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 KANSL1LA0AUZ9 987 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 MTA2O94776 668 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 AGTP01019 485 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 APOA1P02647 267 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 RBP3P10745 1247 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 SP3Q02447 781 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 BST2Q10589 180 aaKnown RBP21.22■□□□□ 0.99
UPF1-207ENST00000599848 EFEMP1Q12805 493 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 FBXO47Q5MNV8 452 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 UBA3Q8TBC4 463 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 ELOVL4Q9GZR5 314 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 ATXN3LQ9H3M9 355 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 TRABDQ9H4I3 376 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 PXMP2Q9NR77 195 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 CRYL1Q9Y2S2 319 aa21.22■□□□□ 0.99
UPF1-207ENST00000599848 NDUFB5O43674 189 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 SREBF1P36956 1147 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 CENPAP49450 140 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 HIBCHQ6NVY1 386 aaPredicted RBP21.21■□□□□ 0.99
UPF1-207ENST00000599848 LZTR1Q8N653 840 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 HIPK4Q8NE63 616 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 IGDCC4Q8TDY8 1250 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 MRPL17Q9NRX2 175 aaKnown RBP21.21■□□□□ 0.99
UPF1-207ENST00000599848 TRIM66O15016 1216 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 ADCY6O43306 1168 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 PSTPIP1O43586 416 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 NIPA1Q7RTP0 329 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 CYP4Z1Q86W10 505 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 HORMAD1Q86X24 394 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 SERPINB11Q96P15 392 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 CNPY3Q9BT09 278 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 AGLP35573 1532 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 RBAK-RBAKDNI3L0D1 243 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 ADCY3O60266 1144 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 FGF19O95750 216 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 HSPA9P38646 679 aaKnown RBP21.21■□□□□ 0.99
UPF1-207ENST00000599848 RANBP1P43487 201 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 FSCN1Q16658 493 aaKnown RBP21.21■□□□□ 0.99
UPF1-207ENST00000599848 SLFN11Q7Z7L1 901 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 FAM162AQ96A26 154 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 STAMBPL1Q96FJ0 436 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 SGSM3Q96HU1 749 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 FAM47DPA6NHR8 397 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 TBC1D4O60343 1298 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 ATXN7L3BQ96GX2 97 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 NOP53Q9NZM5 478 aaKnown RBP21.21■□□□□ 0.99
UPF1-207ENST00000599848 GTF3C4Q9UKN8 822 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 PNPLA6Q8IY17 1366 aa21.21■□□□□ 0.99
UPF1-207ENST00000599848 TECPR2O15040 1411 aa21.2■□□□□ 0.99
UPF1-207ENST00000599848 SLC15A5A6NIM6 579 aa21.2■□□□□ 0.99
UPF1-207ENST00000599848 TOMM70O94826 608 aa21.2■□□□□ 0.99
UPF1-207ENST00000599848 DDNO94850 711 aaPredicted RBP21.2■□□□□ 0.99
UPF1-207ENST00000599848 POMCP01189 267 aa21.2■□□□□ 0.99
UPF1-207ENST00000599848 CLCN3P51790 818 aa21.2■□□□□ 0.99
UPF1-207ENST00000599848 TTC39BQ5VTQ0 682 aaPredicted RBP21.2■□□□□ 0.99
UPF1-207ENST00000599848 SLC27A1Q6PCB7 646 aa21.2■□□□□ 0.99
UPF1-207ENST00000599848 DIS3LQ8TF46 1054 aaKnown RBP21.2■□□□□ 0.99
UPF1-207ENST00000599848 PTPRMP28827 1452 aa21.2■□□□□ 0.98
UPF1-207ENST00000599848 GALCP54803 685 aa21.2■□□□□ 0.98
UPF1-207ENST00000599848 CUL3Q13618 768 aa21.2■□□□□ 0.98
UPF1-207ENST00000599848 PTGISQ16647 500 aa21.2■□□□□ 0.98
UPF1-207ENST00000599848 METTL3Q86U44 580 aaKnown RBP21.2■□□□□ 0.98
UPF1-207ENST00000599848 SLC35G2Q8TBE7 412 aa21.2■□□□□ 0.98
UPF1-207ENST00000599848 RBM15Q96T37 977 aaKnown RBP eCLIP21.2■□□□□ 0.982e-7■■■■□ 21.3
UPF1-207ENST00000599848 TIMM44O43615 452 aa21.2■□□□□ 0.98
UPF1-207ENST00000599848 MYBP10242 640 aa21.2■□□□□ 0.98
UPF1-207ENST00000599848 MSH3P20585 1137 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms