RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 VCPP55072 806 aaKnown RBP17.13■□□□□ 0.33
TRIM28-213ENST00000598355 STARD6P59095 220 aa17.13■□□□□ 0.33
TRIM28-213ENST00000598355 ORC1Q13415 861 aa17.13■□□□□ 0.33
TRIM28-213ENST00000598355 CUL2Q13617 745 aa17.13■□□□□ 0.33
TRIM28-213ENST00000598355 WDR44Q5JSH3 913 aa17.13■□□□□ 0.33
TRIM28-213ENST00000598355 IER5LQ5T953 404 aa17.13■□□□□ 0.33
TRIM28-213ENST00000598355 PHLDB3Q6NSJ2 640 aa17.13■□□□□ 0.33
TRIM28-213ENST00000598355 MON1AQ86VX9 555 aa17.13■□□□□ 0.33
TRIM28-213ENST00000598355 SUGP1Q8IWZ8 645 aaKnown RBP17.13■□□□□ 0.33
TRIM28-213ENST00000598355 C12orf29Q8N999 325 aa17.13■□□□□ 0.33
TRIM28-213ENST00000598355 SLC2A14Q8TDB8 520 aa17.13■□□□□ 0.33
TRIM28-213ENST00000598355 MRPS31Q92665 395 aaKnown RBP17.13■□□□□ 0.33
TRIM28-213ENST00000598355 LRRC3BQ96PB8 259 aa17.13■□□□□ 0.33
TRIM28-213ENST00000598355 SMOQ99835 787 aa17.13■□□□□ 0.33
TRIM28-213ENST00000598355 KCNH6Q9H252 994 aa17.13■□□□□ 0.33
TRIM28-213ENST00000598355 EHD2Q9NZN4 543 aa17.13■□□□□ 0.33
TRIM28-213ENST00000598355 FBXL21Q9UKT6 434 aa17.13■□□□□ 0.33
TRIM28-213ENST00000598355 SHISA7A6NL88 538 aa17.12■□□□□ 0.33
TRIM28-213ENST00000598355 OLFM2O95897 454 aa17.12■□□□□ 0.33
TRIM28-213ENST00000598355 CCDC192P0DO97 292 aa17.12■□□□□ 0.33
TRIM28-213ENST00000598355 PFKLP17858 780 aa17.12■□□□□ 0.33
TRIM28-213ENST00000598355 CD58P19256 250 aa17.12■□□□□ 0.33
TRIM28-213ENST00000598355 ERCC5P28715 1186 aaPredicted RBP17.12■□□□□ 0.33
TRIM28-213ENST00000598355 CLCN5P51795 746 aa17.12■□□□□ 0.33
TRIM28-213ENST00000598355 RAD23BP54727 409 aa17.12■□□□□ 0.33
TRIM28-213ENST00000598355 KCNH2Q12809 1159 aa17.12■□□□□ 0.33
TRIM28-213ENST00000598355 GRM2Q14416 872 aa17.12■□□□□ 0.33
TRIM28-213ENST00000598355 ZNF268Q14587 947 aaPredicted RBP17.12■□□□□ 0.33
TRIM28-213ENST00000598355 CT47A1Q5JQC4 288 aaPredicted RBP17.12■□□□□ 0.33
TRIM28-213ENST00000598355 TXNDC8Q6A555 127 aa17.12■□□□□ 0.33
TRIM28-213ENST00000598355 SLC4A11Q8NBS3 891 aa17.12■□□□□ 0.33
TRIM28-213ENST00000598355 CNOT6LQ96LI5 555 aaKnown RBP17.12■□□□□ 0.33
TRIM28-213ENST00000598355 KCNK16Q96T55 309 aa17.12■□□□□ 0.33
TRIM28-213ENST00000598355 TRMT61BQ9BVS5 477 aaKnown RBP17.12■□□□□ 0.33
TRIM28-213ENST00000598355 KIF9Q9HAQ2 790 aa17.12■□□□□ 0.33
TRIM28-213ENST00000598355 PNPLA8Q9NP80 782 aa17.12■□□□□ 0.33
TRIM28-213ENST00000598355 FAM49BQ9NUQ9 324 aa17.12■□□□□ 0.33
TRIM28-213ENST00000598355 GCNT4Q9P109 453 aa17.12■□□□□ 0.33
TRIM28-213ENST00000598355 HHLA1C9JL84 531 aa17.11■□□□□ 0.33
TRIM28-213ENST00000598355 CHADO15335 359 aa17.11■□□□□ 0.33
TRIM28-213ENST00000598355 AP1G2O75843 785 aa17.11■□□□□ 0.33
TRIM28-213ENST00000598355 BEST1O76090 585 aa17.11■□□□□ 0.33
TRIM28-213ENST00000598355 RTN3O95197 1032 aaPredicted RBP17.11■□□□□ 0.33
TRIM28-213ENST00000598355 TCF3P15923 654 aa17.11■□□□□ 0.33
TRIM28-213ENST00000598355 AOC1P19801 751 aa17.11■□□□□ 0.33
TRIM28-213ENST00000598355 TBXAS1P24557 533 aaPredicted RBP17.11■□□□□ 0.33
TRIM28-213ENST00000598355 PPP3CCP48454 512 aa17.11■□□□□ 0.33
TRIM28-213ENST00000598355 SLC5A3P53794 718 aa17.11■□□□□ 0.33
TRIM28-213ENST00000598355 PRKCQQ04759 706 aa17.11■□□□□ 0.33
TRIM28-213ENST00000598355 MLF2Q15773 248 aaPredicted RBP17.11■□□□□ 0.33
TRIM28-213ENST00000598355 ASTLQ6HA08 431 aaPredicted RBP17.11■□□□□ 0.33
TRIM28-213ENST00000598355 CLEC20AQ6ZU45 233 aa17.11■□□□□ 0.33
TRIM28-213ENST00000598355 NUP93Q8N1F7 819 aa17.11■□□□□ 0.33
TRIM28-213ENST00000598355 TMEM105Q8N8V8 129 aa17.11■□□□□ 0.33
TRIM28-213ENST00000598355 MAB21L3Q8N8X9 362 aa17.11■□□□□ 0.33
TRIM28-213ENST00000598355 RIN3Q8TB24 985 aa17.11■□□□□ 0.33
TRIM28-213ENST00000598355 OVCA2Q8WZ82 227 aa17.11■□□□□ 0.33
TRIM28-213ENST00000598355 USP13Q92995 863 aaPredicted RBP17.11■□□□□ 0.33
TRIM28-213ENST00000598355 COMMD8Q9NX08 183 aa17.11■□□□□ 0.33
TRIM28-213ENST00000598355 CA14Q9ULX7 337 aa17.11■□□□□ 0.33
TRIM28-213ENST00000598355 HCN4Q9Y3Q4 1203 aa17.11■□□□□ 0.33
TRIM28-213ENST00000598355 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.11■□□□□ 0.331e-7■□□□□ 10.5
TRIM28-213ENST00000598355 MBD3O95983 291 aa17.1■□□□□ 0.33
TRIM28-213ENST00000598355 OAS1P00973 400 aaKnown RBP17.1■□□□□ 0.33
TRIM28-213ENST00000598355 AFPP02771 609 aaKnown RBP17.1■□□□□ 0.33
TRIM28-213ENST00000598355 FAM200BP0CF97 657 aa17.1■□□□□ 0.33
TRIM28-213ENST00000598355 TRIM21P19474 475 aaKnown RBP17.1■□□□□ 0.33
TRIM28-213ENST00000598355 AVPR2P30518 371 aa17.1■□□□□ 0.33
TRIM28-213ENST00000598355 NUBP1P53384 320 aa17.1■□□□□ 0.33
TRIM28-213ENST00000598355 USP4Q13107 963 aa17.1■□□□□ 0.33
TRIM28-213ENST00000598355 SNX30Q5VWJ9 437 aa17.1■□□□□ 0.33
TRIM28-213ENST00000598355 ARHGAP17Q68EM7 881 aa17.1■□□□□ 0.33
TRIM28-213ENST00000598355 CELF5Q8N6W0 485 aaKnown RBP17.1■□□□□ 0.33
TRIM28-213ENST00000598355 IRF7Q92985 503 aa17.1■□□□□ 0.33
TRIM28-213ENST00000598355 CYFIP2Q96F07 1278 aa17.1■□□□□ 0.33
TRIM28-213ENST00000598355 TMEM176AQ96HP8 235 aa17.1■□□□□ 0.33
TRIM28-213ENST00000598355 SLC22A12Q96S37 553 aa17.1■□□□□ 0.33
TRIM28-213ENST00000598355 MED10Q9BTT4 135 aa17.1■□□□□ 0.33
TRIM28-213ENST00000598355 THAP9Q9H5L6 903 aa17.1■□□□□ 0.33
TRIM28-213ENST00000598355 TBC1D17Q9HA65 648 aa17.1■□□□□ 0.33
TRIM28-213ENST00000598355 RAPGEFL1Q9UHV5 662 aa17.1■□□□□ 0.33
TRIM28-213ENST00000598355 DACH1Q9UI36 760 aa17.1■□□□□ 0.33
TRIM28-213ENST00000598355 CCL26Q9Y258 94 aa17.1■□□□□ 0.33
TRIM28-213ENST00000598355 FANCMQ8IYD8 2048 aa17.09■□□□□ 0.33
TRIM28-213ENST00000598355 ZNF840PA6NDX5 716 aa17.09■□□□□ 0.33
TRIM28-213ENST00000598355 ZDHHC11BP0C7U3 371 aa17.09■□□□□ 0.33
TRIM28-213ENST00000598355 ACO1P21399 889 aaKnown RBP17.09■□□□□ 0.33
TRIM28-213ENST00000598355 GDI1P31150 447 aa17.09■□□□□ 0.33
TRIM28-213ENST00000598355 AVPR1AP37288 418 aa17.09■□□□□ 0.33
TRIM28-213ENST00000598355 MLLT6P55198 1093 aaPredicted RBP17.09■□□□□ 0.33
TRIM28-213ENST00000598355 YWHAEP62258 255 aaKnown RBP17.09■□□□□ 0.33
TRIM28-213ENST00000598355 GCNT1Q02742 428 aa17.09■□□□□ 0.33
TRIM28-213ENST00000598355 TAF10Q12962 218 aa17.09■□□□□ 0.33
TRIM28-213ENST00000598355 ZNF77Q15935 545 aa17.09■□□□□ 0.33
TRIM28-213ENST00000598355 SLC44A4Q53GD3 710 aa17.09■□□□□ 0.33
TRIM28-213ENST00000598355 PPP1R26Q5T8A7 1209 aaPredicted RBP17.09■□□□□ 0.33
TRIM28-213ENST00000598355 PDZD8Q8NEN9 1154 aa17.09■□□□□ 0.33
TRIM28-213ENST00000598355 BPIFB1Q8TDL5 484 aa17.09■□□□□ 0.33
TRIM28-213ENST00000598355 NT5C1BQ96P26 610 aa17.09■□□□□ 0.33
TRIM28-213ENST00000598355 SLITRK1Q96PX8 696 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms