RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 B3GNT5Q9BYG0 378 aa18.86■□□□□ 0.61
SHKBP1-204ENST00000594862 ZNF518BQ9C0D4 1074 aa18.86■□□□□ 0.61
SHKBP1-204ENST00000594862 DMAP1Q9NPF5 467 aaPredicted RBP18.86■□□□□ 0.61
SHKBP1-204ENST00000594862 TRPM5Q9NZQ8 1165 aa18.86■□□□□ 0.61
SHKBP1-204ENST00000594862 DLGAP2Q9P1A6 1054 aa18.86■□□□□ 0.61
SHKBP1-204ENST00000594862 ARMCX3Q9UH62 379 aaPredicted RBP18.86■□□□□ 0.61
SHKBP1-204ENST00000594862 MAN1B1Q9UKM7 699 aa18.86■□□□□ 0.61
SHKBP1-204ENST00000594862 NME7Q9Y5B8 376 aa18.86■□□□□ 0.61
SHKBP1-204ENST00000594862 GREB1Q4ZG55 1949 aa18.86■□□□□ 0.61
SHKBP1-204ENST00000594862 NCANO14594 1321 aa18.85■□□□□ 0.61
SHKBP1-204ENST00000594862 H0Y858 1186 aa18.85■□□□□ 0.61
SHKBP1-204ENST00000594862 TADA3O75528 432 aa18.85■□□□□ 0.61
SHKBP1-204ENST00000594862 CKMP06732 381 aa18.85■□□□□ 0.61
SHKBP1-204ENST00000594862 DCNP07585 359 aaKnown RBP18.85■□□□□ 0.61
SHKBP1-204ENST00000594862 KPNA1P52294 538 aaPredicted RBP18.85■□□□□ 0.61
SHKBP1-204ENST00000594862 WDR44Q5JSH3 913 aa18.85■□□□□ 0.61
SHKBP1-204ENST00000594862 TXNDC8Q6A555 127 aa18.85■□□□□ 0.61
SHKBP1-204ENST00000594862 ANKRD40Q6AI12 368 aa18.85■□□□□ 0.61
SHKBP1-204ENST00000594862 CC2D1AQ6P1N0 951 aaPredicted RBP18.85■□□□□ 0.61
SHKBP1-204ENST00000594862 FAM35AQ86V20 835 aa18.85■□□□□ 0.61
SHKBP1-204ENST00000594862 RALGPS2Q86X27 583 aaPredicted RBP18.85■□□□□ 0.61
SHKBP1-204ENST00000594862 CRYBG2Q8N1P7 616 aa18.85■□□□□ 0.61
SHKBP1-204ENST00000594862 TRIML1Q8N9V2 468 aa18.85■□□□□ 0.61
SHKBP1-204ENST00000594862 OVCA2Q8WZ82 227 aa18.85■□□□□ 0.61
SHKBP1-204ENST00000594862 FAM3CQ92520 227 aa18.85■□□□□ 0.61
SHKBP1-204ENST00000594862 CLDN23Q96B33 292 aa18.85■□□□□ 0.61
SHKBP1-204ENST00000594862 SDCBP2Q9H190 292 aa18.85■□□□□ 0.61
SHKBP1-204ENST00000594862 MMRN2Q9H8L6 949 aa18.85■□□□□ 0.61
SHKBP1-204ENST00000594862 COMMD8Q9NX08 183 aa18.85■□□□□ 0.61
SHKBP1-204ENST00000594862 RIF1Q5UIP0 2472 aaKnown RBP18.85■□□□□ 0.61
SHKBP1-204ENST00000594862 NDST1P52848 882 aa18.84■□□□□ 0.61
SHKBP1-204ENST00000594862 AMPD2Q01433 879 aa18.84■□□□□ 0.61
SHKBP1-204ENST00000594862 DCAF17Q5H9S7 520 aaPredicted RBP18.84■□□□□ 0.61
SHKBP1-204ENST00000594862 TCERG1LQ5VWI1 586 aa18.84■□□□□ 0.61
SHKBP1-204ENST00000594862 NUP93Q8N1F7 819 aa18.84■□□□□ 0.61
SHKBP1-204ENST00000594862 KIAA1958Q8N8K9 716 aa18.84■□□□□ 0.61
SHKBP1-204ENST00000594862 STKLD1Q8NE28 680 aa18.84■□□□□ 0.61
SHKBP1-204ENST00000594862 USP13Q92995 863 aaPredicted RBP18.84■□□□□ 0.61
SHKBP1-204ENST00000594862 NT5C1AQ9BXI3 368 aa18.84■□□□□ 0.61
SHKBP1-204ENST00000594862 TRPC7Q9HCX4 862 aa18.84■□□□□ 0.61
SHKBP1-204ENST00000594862 ZNF638Q14966 1978 aaKnown RBP18.84■□□□□ 0.61
SHKBP1-204ENST00000594862 SPTBN4Q9H254 2564 aa18.84■□□□□ 0.61
SHKBP1-204ENST00000594862 GADD45BO75293 160 aaPredicted RBP18.83■□□□□ 0.6
SHKBP1-204ENST00000594862 TCF3P15923 654 aa18.83■□□□□ 0.6
SHKBP1-204ENST00000594862 TARSP26639 723 aaKnown RBP18.83■□□□□ 0.6
SHKBP1-204ENST00000594862 NBL1P41271 181 aa18.83■□□□□ 0.6
SHKBP1-204ENST00000594862 MORC3Q14149 939 aa18.83■□□□□ 0.6
SHKBP1-204ENST00000594862 LRRC32Q14392 662 aa18.83■□□□□ 0.6
SHKBP1-204ENST00000594862 PDGFRLQ15198 375 aa18.83■□□□□ 0.6
SHKBP1-204ENST00000594862 ITPRIPL2Q3MIP1 535 aa18.83■□□□□ 0.6
SHKBP1-204ENST00000594862 SPOPLQ6IQ16 392 aa18.83■□□□□ 0.6
SHKBP1-204ENST00000594862 FRMD5Q7Z6J6 570 aa18.83■□□□□ 0.6
SHKBP1-204ENST00000594862 ACOT1Q86TX2 421 aa18.83■□□□□ 0.6
SHKBP1-204ENST00000594862 C1orf210Q8IVY1 113 aa18.83■□□□□ 0.6
SHKBP1-204ENST00000594862 ERCC4Q92889 916 aaPredicted RBP18.83■□□□□ 0.6
SHKBP1-204ENST00000594862 EXOC4Q96A65 974 aa18.83■□□□□ 0.6
SHKBP1-204ENST00000594862 KRT82Q9NSB4 513 aa18.83■□□□□ 0.6
SHKBP1-204ENST00000594862 RAB20Q9NX57 234 aa18.83■□□□□ 0.6
SHKBP1-204ENST00000594862 PROB1E7EW31 1015 aa18.82■□□□□ 0.6
SHKBP1-204ENST00000594862 YWHAQP27348 245 aa18.82■□□□□ 0.6
SHKBP1-204ENST00000594862 ZC3H14Q6PJT7 736 aaKnown RBP18.82■□□□□ 0.6
SHKBP1-204ENST00000594862 FILIP1Q7Z7B0 1213 aa18.82■□□□□ 0.6
SHKBP1-204ENST00000594862 FUKQ8N0W3 1084 aa18.82■□□□□ 0.6
SHKBP1-204ENST00000594862 EEF2KMTQ96G04 330 aa18.82■□□□□ 0.6
SHKBP1-204ENST00000594862 SMG9Q9H0W8 520 aaKnown RBP18.82■□□□□ 0.6
SHKBP1-204ENST00000594862 SPATA6Q9NWH7 488 aaPredicted RBP18.82■□□□□ 0.6
SHKBP1-204ENST00000594862 FBXO4Q9UKT5 387 aa18.82■□□□□ 0.6
SHKBP1-204ENST00000594862 ARHGAP26Q9UNA1 814 aa18.82■□□□□ 0.6
SHKBP1-204ENST00000594862 HELZP42694 1942 aaKnown RBP18.82■□□□□ 0.6
SHKBP1-204ENST00000594862 PATJQ8NI35 1801 aa18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 TRIM49BA6NDI0 452 aa18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 SPECC1L-ADORA2AF8WAN1 911 aa18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 CLDN5O00501 218 aa18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 LAMTOR5O43504 91 aa18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 CILPO75339 1184 aa18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 AP1G2O75843 785 aa18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 GNA14O95837 355 aa18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 FAM200BP0CF97 657 aa18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 HDCP19113 662 aa18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 CD72P21854 359 aa18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 CTHP32929 405 aa18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 PMS1P54277 932 aaKnown RBP18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 YWHAEP62258 255 aaKnown RBP18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 CETN1Q12798 172 aa18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 USP4Q13107 963 aa18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 PPP2R5DQ14738 602 aa18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 MTF1Q14872 753 aa18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 CCDC40Q4G0X9 1142 aa18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 DDX42Q86XP3 938 aaKnown RBP eCLIP18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 SLC2A14Q8TDB8 520 aa18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 LRRC3BQ96PB8 259 aa18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 HNRNPABQ99729 332 aaKnown RBP18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 FAM83CQ9BQN1 747 aa18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 SEMA4AQ9H3S1 761 aa18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 FBXO44Q9H4M3 255 aa18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 APOBEC3GQ9HC16 384 aaKnown RBP18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 CSNK1G1Q9HCP0 422 aa18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 PNPLA8Q9NP80 782 aa18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 GCNT4Q9P109 453 aa18.81■□□□□ 0.6
SHKBP1-204ENST00000594862 COQ4Q9Y3A0 265 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms