RNA–Protein interactions for RNA: ENST00000588555.1

SCAMP4-210, Transcript of secretory carrier membrane protein 4, humanhuman

Gene SCAMP4, Length 1,785 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-210ENST00000588555 CAPZA3Q96KX2 299 aa27.41■■□□□ 1.98
SCAMP4-210ENST00000588555 B3GALT6Q96L58 329 aa27.41■■□□□ 1.98
SCAMP4-210ENST00000588555 ZCWPW1Q9H0M4 648 aa27.41■■□□□ 1.98
SCAMP4-210ENST00000588555 SPOPO43791 374 aa27.4■■□□□ 1.98
SCAMP4-210ENST00000588555 FGBP02675 491 aa27.4■■□□□ 1.98
SCAMP4-210ENST00000588555 ACADSBP45954 432 aa27.4■■□□□ 1.98
SCAMP4-210ENST00000588555 TERF1P54274 439 aa27.4■■□□□ 1.98
SCAMP4-210ENST00000588555 SCUBE3Q8IX30 993 aa27.4■■□□□ 1.98
SCAMP4-210ENST00000588555 FNIP1Q8TF40 1166 aa27.4■■□□□ 1.98
SCAMP4-210ENST00000588555 KCTD13Q8WZ19 329 aa27.4■■□□□ 1.98
SCAMP4-210ENST00000588555 ALG3Q92685 438 aa27.4■■□□□ 1.98
SCAMP4-210ENST00000588555 KRT35Q92764 455 aa27.4■■□□□ 1.98
SCAMP4-210ENST00000588555 SMARCD1Q96GM5 515 aa27.4■■□□□ 1.98
SCAMP4-210ENST00000588555 RHOBTB2Q9BYZ6 727 aa27.4■■□□□ 1.98
SCAMP4-210ENST00000588555 CSNK1G1Q9HCP0 422 aa27.4■■□□□ 1.98
SCAMP4-210ENST00000588555 LCMT1Q9UIC8 334 aa27.4■■□□□ 1.98
SCAMP4-210ENST00000588555 TMEM59LQ9UK28 342 aa27.4■■□□□ 1.98
SCAMP4-210ENST00000588555 PDE2AO00408 941 aaPredicted RBP27.4■■□□□ 1.98
SCAMP4-210ENST00000588555 CTNNA1P35221 906 aaKnown RBP27.4■■□□□ 1.98
SCAMP4-210ENST00000588555 MARCKSL1P49006 195 aa27.4■■□□□ 1.98
SCAMP4-210ENST00000588555 PEX5P50542 639 aa27.4■■□□□ 1.98
SCAMP4-210ENST00000588555 MAP3K7CLP57077 242 aa27.4■■□□□ 1.98
SCAMP4-210ENST00000588555 CEP57Q86XR8 500 aa27.4■■□□□ 1.98
SCAMP4-210ENST00000588555 ZDHHC17Q8IUH5 632 aa27.4■■□□□ 1.98
SCAMP4-210ENST00000588555 RNF168Q8IYW5 571 aaPredicted RBP27.4■■□□□ 1.98
SCAMP4-210ENST00000588555 NIPA2Q8N8Q9 360 aa27.4■■□□□ 1.98
SCAMP4-210ENST00000588555 KHSRPQ92945 711 aaKnown RBP eCLIP27.4■■□□□ 1.98
SCAMP4-210ENST00000588555 CTNNA2P26232 953 aa27.39■■□□□ 1.98
SCAMP4-210ENST00000588555 SLC6A3Q01959 620 aa27.39■■□□□ 1.98
SCAMP4-210ENST00000588555 RTP2Q5QGT7 225 aa27.39■■□□□ 1.98
SCAMP4-210ENST00000588555 TMEM240Q5SV17 173 aa27.39■■□□□ 1.98
SCAMP4-210ENST00000588555 DCAF12L1Q5VU92 463 aa27.39■■□□□ 1.98
SCAMP4-210ENST00000588555 KCNT2Q6UVM3 1135 aa27.39■■□□□ 1.98
SCAMP4-210ENST00000588555 TAS1R1Q7RTX1 841 aa27.39■■□□□ 1.98
SCAMP4-210ENST00000588555 EMC1Q8N766 993 aa27.39■■□□□ 1.98
SCAMP4-210ENST00000588555 CEP112Q8N8E3 955 aa27.39■■□□□ 1.98
SCAMP4-210ENST00000588555 GADD45GIP1Q8TAE8 222 aaPredicted RBP27.39■■□□□ 1.98
SCAMP4-210ENST00000588555 IGSF21Q96ID5 467 aa27.39■■□□□ 1.98
SCAMP4-210ENST00000588555 KCNK16Q96T55 309 aa27.39■■□□□ 1.98
SCAMP4-210ENST00000588555 VN1R3Q9BXE9 311 aa27.39■■□□□ 1.98
SCAMP4-210ENST00000588555 OR4Q2P0C623 313 aa27.38■■□□□ 1.97
SCAMP4-210ENST00000588555 GTF2F1P35269 517 aaKnown RBP eCLIP27.38■■□□□ 1.97
SCAMP4-210ENST00000588555 BTG3Q14201 252 aaPredicted RBP27.38■■□□□ 1.97
SCAMP4-210ENST00000588555 DAB2IPQ5VWQ8 1189 aa27.38■■□□□ 1.97
SCAMP4-210ENST00000588555 PBKQ96KB5 322 aa27.38■■□□□ 1.97
SCAMP4-210ENST00000588555 PCDHA3Q9Y5H8 950 aa27.38■■□□□ 1.97
SCAMP4-210ENST00000588555 MRPL42Q9Y6G3 142 aaKnown RBP27.38■■□□□ 1.97
SCAMP4-210ENST00000588555 TBC1D4O60343 1298 aa27.37■■□□□ 1.97
SCAMP4-210ENST00000588555 LCP1P13796 627 aa27.37■■□□□ 1.97
SCAMP4-210ENST00000588555 BDNFP23560 247 aa27.37■■□□□ 1.97
SCAMP4-210ENST00000588555 SCNN1AP37088 669 aa27.37■■□□□ 1.97
SCAMP4-210ENST00000588555 PIGHQ14442 188 aaPredicted RBP27.37■■□□□ 1.97
SCAMP4-210ENST00000588555 ZNF280DQ6N043 979 aa27.37■■□□□ 1.97
SCAMP4-210ENST00000588555 TRNP1Q6NT89 227 aa27.37■■□□□ 1.97
SCAMP4-210ENST00000588555 CLEC4CQ8WTT0 213 aa27.37■■□□□ 1.97
SCAMP4-210ENST00000588555 BUD13Q9BRD0 619 aaKnown RBP eCLIP27.37■■□□□ 1.97
SCAMP4-210ENST00000588555 UBXN6Q9BZV1 441 aa27.37■■□□□ 1.97
SCAMP4-210ENST00000588555 EHD2Q9NZN4 543 aa27.37■■□□□ 1.97
SCAMP4-210ENST00000588555 CXXC1Q9P0U4 656 aaPredicted RBP27.37■■□□□ 1.97
SCAMP4-210ENST00000588555 CCDC66A2RUB6 948 aa27.37■■□□□ 1.97
SCAMP4-210ENST00000588555 ZBBXA8MT70 800 aa27.37■■□□□ 1.97
SCAMP4-210ENST00000588555 HHLA1C9JL84 531 aa27.37■■□□□ 1.97
SCAMP4-210ENST00000588555 F8VP50 259 aa27.37■■□□□ 1.97
SCAMP4-210ENST00000588555 TAF5Q15542 800 aa27.37■■□□□ 1.97
SCAMP4-210ENST00000588555 CTXN3Q4LDR2 81 aa27.37■■□□□ 1.97
SCAMP4-210ENST00000588555 SLC39A12Q504Y0 691 aa27.37■■□□□ 1.97
SCAMP4-210ENST00000588555 UBL4BQ8N7F7 174 aa27.37■■□□□ 1.97
SCAMP4-210ENST00000588555 MNS1Q8NEH6 495 aa27.37■■□□□ 1.97
SCAMP4-210ENST00000588555 MS4A14Q96JA4 679 aa27.37■■□□□ 1.97
SCAMP4-210ENST00000588555 TTPALQ9BTX7 342 aa27.37■■□□□ 1.97
SCAMP4-210ENST00000588555 CARD9Q9H257 536 aa27.37■■□□□ 1.97
SCAMP4-210ENST00000588555 OR6C75A6NL08 312 aa27.36■■□□□ 1.97
SCAMP4-210ENST00000588555 CTIFO43310 598 aaKnown RBP27.36■■□□□ 1.97
SCAMP4-210ENST00000588555 GJB5O95377 273 aa27.36■■□□□ 1.97
SCAMP4-210ENST00000588555 RABGGTBP53611 331 aa27.36■■□□□ 1.97
SCAMP4-210ENST00000588555 ADCY1Q08828 1119 aa27.36■■□□□ 1.97
SCAMP4-210ENST00000588555 ADIGQ0VDE8 80 aa27.36■■□□□ 1.97
SCAMP4-210ENST00000588555 RAB41Q5JT25 222 aa27.36■■□□□ 1.97
SCAMP4-210ENST00000588555 PSRC1Q6PGN9 363 aaPredicted RBP27.36■■□□□ 1.97
SCAMP4-210ENST00000588555 C4orf50Q6ZRC1 276 aa27.36■■□□□ 1.97
SCAMP4-210ENST00000588555 SLC26A9Q7LBE3 791 aa27.36■■□□□ 1.97
SCAMP4-210ENST00000588555 ZNF572Q7Z3I7 529 aaPredicted RBP27.36■■□□□ 1.97
SCAMP4-210ENST00000588555 DCP1BQ8IZD4 617 aaKnown RBP27.36■■□□□ 1.97
SCAMP4-210ENST00000588555 SLC39A11Q8N1S5 342 aa27.36■■□□□ 1.97
SCAMP4-210ENST00000588555 ZNF558Q96NG5 402 aa27.36■■□□□ 1.97
SCAMP4-210ENST00000588555 YME1L1Q96TA2 773 aa27.36■■□□□ 1.97
SCAMP4-210ENST00000588555 SMARCAL1Q9NZC9 954 aa27.36■■□□□ 1.97
SCAMP4-210ENST00000588555 RNF14Q9UBS8 474 aa27.36■■□□□ 1.97
SCAMP4-210ENST00000588555 C2CD4BA6NLJ0 364 aa27.35■■□□□ 1.97
SCAMP4-210ENST00000588555 TADA3O75528 432 aa27.35■■□□□ 1.97
SCAMP4-210ENST00000588555 SYN1P17600 705 aa27.35■■□□□ 1.97
SCAMP4-210ENST00000588555 FLT3P36888 993 aa27.35■■□□□ 1.97
SCAMP4-210ENST00000588555 HTRA4P83105 476 aaPredicted RBP27.35■■□□□ 1.97
SCAMP4-210ENST00000588555 CKAP4Q07065 602 aaKnown RBP27.35■■□□□ 1.97
SCAMP4-210ENST00000588555 PATJQ8NI35 1801 aa27.35■■□□□ 1.97
SCAMP4-210ENST00000588555 KIAA1671Q9BY89 1806 aa27.35■■□□□ 1.97
SCAMP4-210ENST00000588555 GRAP2O75791 330 aa27.35■■□□□ 1.97
SCAMP4-210ENST00000588555 PSMA2P25787 234 aa27.35■■□□□ 1.97
SCAMP4-210ENST00000588555 TAS2R40P59535 323 aa27.35■■□□□ 1.97
SCAMP4-210ENST00000588555 CFAP221Q4G0U5 840 aa27.35■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms