RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 YME1L1Q96TA2 773 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.68□□□□□ -1.5
LIG3-210ENST00000588109 MRPL18Q9H0U6 180 aaKnown RBP5.68□□□□□ -1.5
LIG3-210ENST00000588109 UBE2TQ9NPD8 197 aaPredicted RBP5.68□□□□□ -1.5
LIG3-210ENST00000588109 NLRC4Q9NPP4 1024 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 PLCB1Q9NQ66 1216 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 TBC1D13Q9NVG8 400 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 MIOSQ9NXC5 875 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 CEP72Q9P209 647 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 IMPACTQ9P2X3 320 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 DNAJC12Q9UKB3 198 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 PLAGL2Q9UPG8 496 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 LUC7L2Q9Y383 392 aaKnown RBP5.68□□□□□ -1.5
LIG3-210ENST00000588109 COQ4Q9Y3A0 265 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 NUB1Q9Y5A7 615 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 SLC4A7Q9Y6M7 1214 aa5.68□□□□□ -1.5
LIG3-210ENST00000588109 PDCD11Q14690 1871 aaKnown RBP5.68□□□□□ -1.5
LIG3-210ENST00000588109 TDRD15B5MCY1 1934 aaKnown RBP5.68□□□□□ -1.5
LIG3-210ENST00000588109 A0A1W2PQJ5 194 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 KPNA7A9QM74 516 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 AKR1B15C9JRZ8 316 aaPredicted RBP5.67□□□□□ -1.5
LIG3-210ENST00000588109 PIRO00625 290 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 PPEF2O14830 753 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 EPHB6O15197 1021 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 INPPL1O15357 1258 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 NRDCO43847 1150 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 LRRN2O75325 713 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 DEAF1O75398 565 aaPredicted RBP5.67□□□□□ -1.5
LIG3-210ENST00000588109 TADA2AO75478 443 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 DGKIO75912 1065 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 B3GAT3O94766 335 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 DDHD2O94830 711 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 GYPCP04921 128 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 ALDH2P05091 517 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 KRT5P13647 590 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 UCHL3P15374 230 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 ATP2A2P16615 1042 aaKnown RBP5.67□□□□□ -1.5
LIG3-210ENST00000588109 CD58P19256 250 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 EPHA1P21709 976 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 LRPAP1P30533 357 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 CASP14P31944 242 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 CD68P34810 354 aaPredicted RBP5.67□□□□□ -1.5
LIG3-210ENST00000588109 KRT9P35527 623 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 USP8P40818 1118 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 MAGEA10P43363 369 aaPredicted RBP5.67□□□□□ -1.5
LIG3-210ENST00000588109 MFAP3P55082 362 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 ADKP55263 362 aaKnown RBP5.67□□□□□ -1.5
LIG3-210ENST00000588109 GSDMDP57764 484 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 YWHAEP62258 255 aaKnown RBP5.67□□□□□ -1.5
LIG3-210ENST00000588109 CUL2Q13617 745 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 BTG3Q14201 252 aaPredicted RBP5.67□□□□□ -1.5
LIG3-210ENST00000588109 FIGNQ5HY92 759 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 KIAA0319Q5VV43 1072 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 PEAR1Q5VY43 1037 aaPredicted RBP5.67□□□□□ -1.5
LIG3-210ENST00000588109 DCLRE1AQ6PJP8 1040 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 DSTYKQ6XUX3 929 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 SCARA5Q6ZMJ2 495 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 ENOSF1Q7L5Y1 443 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 ZNF280BQ86YH2 543 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 CNGA4Q8IV77 575 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 ARHGEF19Q8IW93 802 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 LMO3Q8TAP4 145 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 HERVK_113Q902F9 699 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 RABGGTAQ92696 567 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 RNPC3Q96LT9 517 aaKnown RBP5.67□□□□□ -1.5
LIG3-210ENST00000588109 CASD1Q96PB1 797 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 SLC9A7Q96T83 725 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 SPOCK3Q9BQ16 436 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 COLEC11Q9BWP8 271 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 EDEM3Q9BZQ6 932 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 BHLHE41Q9C0J9 482 aaPredicted RBP5.67□□□□□ -1.5
LIG3-210ENST00000588109 GANQ9H2C0 597 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 APOBEC3GQ9HC16 384 aaKnown RBP5.67□□□□□ -1.5
LIG3-210ENST00000588109 NPHS2Q9NP85 383 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 SIX2Q9NPC8 291 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 OSGEPQ9NPF4 335 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 ZNHIT6Q9NWK9 470 aaKnown RBP5.67□□□□□ -1.5
LIG3-210ENST00000588109 CACNG4Q9UBN1 327 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 SIX4Q9UIU6 781 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 CAPN11Q9UMQ6 739 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 PRG3Q9Y2Y8 225 aaPredicted RBP5.67□□□□□ -1.5
LIG3-210ENST00000588109 DAAM1Q9Y4D1 1078 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 SNX9Q9Y5X1 595 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 FHOD1Q9Y613 1164 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 TRIP11Q15643 1979 aa5.67□□□□□ -1.5
LIG3-210ENST00000588109 TTC3P53804 2025 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 A0A096LPE4 126 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 A0A1W2PPZ6 126 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 ANO9A1A5B4 782 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 ARHGEF37A1IGU5 675 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 LRRC53A6NM62 1247 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 F8VZ95 297 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 DLL1O00548 723 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 TRAPPC3O43617 180 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 HUS1O60921 280 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 MFAP3LO75121 409 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 NOL4O94818 638 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 GJB5O95377 273 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 WEE2P0C1S8 567 aa5.66□□□□□ -1.5
LIG3-210ENST00000588109 CCDC172P0C7W6 258 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms