RNA–Protein interactions for RNA: ENST00000583328.5

TOP3A-215, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-215ENST00000583328 EMC10Q5UCC4 262 aa13.18□□□□□ -0.3
TOP3A-215ENST00000583328 MCTP1Q6DN14 999 aa13.18□□□□□ -0.3
TOP3A-215ENST00000583328 C19orf48Q6RUI8 117 aa13.18□□□□□ -0.3
TOP3A-215ENST00000583328 ADGRG2Q8IZP9 1017 aa13.18□□□□□ -0.3
TOP3A-215ENST00000583328 TMEM86AQ8N2M4 240 aa13.18□□□□□ -0.3
TOP3A-215ENST00000583328 DEFB119Q8N690 84 aa13.18□□□□□ -0.3
TOP3A-215ENST00000583328 IL17RCQ8NAC3 791 aa13.18□□□□□ -0.3
TOP3A-215ENST00000583328 POMGNT1Q8WZA1 660 aa13.18□□□□□ -0.3
TOP3A-215ENST00000583328 CALML4Q96GE6 196 aa13.18□□□□□ -0.3
TOP3A-215ENST00000583328 PNKPQ96T60 521 aa13.18□□□□□ -0.3
TOP3A-215ENST00000583328 TRPM5Q9NZQ8 1165 aa13.18□□□□□ -0.3
TOP3A-215ENST00000583328 PILRBQ9UKJ0 227 aa13.18□□□□□ -0.3
TOP3A-215ENST00000583328 STYXL1Q9Y6J8 313 aa13.18□□□□□ -0.3
TOP3A-215ENST00000583328 NUP205Q92621 2012 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 TCRBV21S2A2A0A5A6 115 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 FAM221BA6H8Z2 402 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 K7ELQ4 463 aaPredicted RBP13.17□□□□□ -0.3
TOP3A-215ENST00000583328 SLC9A3R1O14745 358 aaPredicted RBP13.17□□□□□ -0.3
TOP3A-215ENST00000583328 ZZEF1O43149 2961 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 AP5Z1O43299 807 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 KAT7O95251 611 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 CYP17A1P05093 508 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 ITGB3P05106 788 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 PFKLP17858 780 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 PCSK1P29120 753 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 HOXD12P35452 270 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 LHX1P48742 406 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 FAM193AP78312 1265 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 ZXDBP98169 803 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 HNRNPDQ14103 355 aaKnown RBP13.17□□□□□ -0.3
TOP3A-215ENST00000583328 MCM6Q14566 821 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 CCDC142Q17RM4 750 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 ZNF423Q2M1K9 1284 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 CFAP221Q4G0U5 840 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 RILPL1Q5EBL4 403 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 CRELD2Q6UXH1 353 aaPredicted RBP13.17□□□□□ -0.3
TOP3A-215ENST00000583328 FILIP1Q7Z7B0 1213 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 OSTM1Q86WC4 334 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 PROSER1Q86XN7 944 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 SFTPA1Q8IWL2 248 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 HSCBQ8IWL3 235 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 CSGALNACT2Q8N6G5 542 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 CACTINQ8WUQ7 758 aaKnown RBP13.17□□□□□ -0.3
TOP3A-215ENST00000583328 FUBP3Q96I24 572 aaKnown RBP eCLIP13.17□□□□□ -0.3
TOP3A-215ENST00000583328 FIZ1Q96SL8 496 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 PKMYT1Q99640 499 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 MAGEC2Q9UBF1 373 aaPredicted RBP13.17□□□□□ -0.3
TOP3A-215ENST00000583328 SNX9Q9Y5X1 595 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 SCN1AP35498 2009 aa13.17□□□□□ -0.3
TOP3A-215ENST00000583328 ZNF638Q14966 1978 aaKnown RBP13.16□□□□□ -0.3
TOP3A-215ENST00000583328 SLC26A4O43511 780 aa13.16□□□□□ -0.3
TOP3A-215ENST00000583328 SERPINF2P08697 491 aa13.16□□□□□ -0.3
TOP3A-215ENST00000583328 KRT19P08727 400 aa13.16□□□□□ -0.3
TOP3A-215ENST00000583328 PLCG1P19174 1290 aa13.16□□□□□ -0.3
TOP3A-215ENST00000583328 GRIK1P39086 918 aa13.16□□□□□ -0.3
TOP3A-215ENST00000583328 EIF2DP41214 584 aaKnown RBP13.16□□□□□ -0.3
TOP3A-215ENST00000583328 UBA7P41226 1012 aa13.16□□□□□ -0.3
TOP3A-215ENST00000583328 GRIA2P42262 883 aa13.16□□□□□ -0.3
TOP3A-215ENST00000583328 MAGEA11P43364 429 aa13.16□□□□□ -0.3
TOP3A-215ENST00000583328 TNFRSF4P43489 277 aa13.16□□□□□ -0.3
TOP3A-215ENST00000583328 RPL6Q02878 288 aaKnown RBP13.16□□□□□ -0.3
TOP3A-215ENST00000583328 SCAPQ12770 1279 aa13.16□□□□□ -0.3
TOP3A-215ENST00000583328 RESTQ13127 1097 aa13.16□□□□□ -0.3
TOP3A-215ENST00000583328 CUL4AQ13619 759 aa13.16□□□□□ -0.3
TOP3A-215ENST00000583328 ARL6IP4Q66PJ3 421 aaKnown RBP13.16□□□□□ -0.3
TOP3A-215ENST00000583328 C4orf50Q6ZRC1 276 aa13.16□□□□□ -0.3
TOP3A-215ENST00000583328 ADGRF2Q8IZF7 708 aa13.16□□□□□ -0.3
TOP3A-215ENST00000583328 MINDY1Q8N5J2 469 aa13.16□□□□□ -0.3
TOP3A-215ENST00000583328 C1orf127Q8N9H9 656 aa13.16□□□□□ -0.3
TOP3A-215ENST00000583328 FAM213AQ9BRX8 229 aa13.16□□□□□ -0.3
TOP3A-215ENST00000583328 ZDHHC4Q9NPG8 344 aa13.16□□□□□ -0.3
TOP3A-215ENST00000583328 ARHGEF4Q9NR80 690 aa13.16□□□□□ -0.3
TOP3A-215ENST00000583328 ANKRD11Q6UB99 2663 aaPredicted RBP13.16□□□□□ -0.3
TOP3A-215ENST00000583328 TBC1D3BA6NDS4 549 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.15□□□□□ -0.3
TOP3A-215ENST00000583328 SCAMP3O14828 347 aaKnown RBP13.15□□□□□ -0.3
TOP3A-215ENST00000583328 HCRTO43612 131 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 ABL1P00519 1130 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 BDNFP23560 247 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 ANXA13P27216 316 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 ADSSP30520 456 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 KIR2DL1P43626 348 aaPredicted RBP13.15□□□□□ -0.3
TOP3A-215ENST00000583328 SLC7A9P82251 487 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 RBP5P82980 135 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 KDSRQ06136 332 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 MESP2Q0VG99 397 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 PEAR1Q5VY43 1037 aaPredicted RBP13.15□□□□□ -0.3
TOP3A-215ENST00000583328 FAM171BQ6P995 826 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 RHBDF2Q6PJF5 856 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 VSTM1Q6UX27 236 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 SLC36A4Q6YBV0 504 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 RABEPKQ7Z6M1 372 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 RAB44Q7Z6P3 723 aaPredicted RBP13.15□□□□□ -0.3
TOP3A-215ENST00000583328 PDZD3Q86UT5 571 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 C12orf40Q86WS4 652 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 TOP6BLQ8N6T0 577 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 LRRC52Q8N7C0 313 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 KIAA1958Q8N8K9 716 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 OR2I1PQ8NGU4 316 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 RASSF8Q8NHQ8 419 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms