RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 LPAL2Q16609 132 aa21.84■■□□□ 1.09
SHMT1-209ENST00000582653 TDRD10Q5VZ19 366 aaKnown RBP21.84■■□□□ 1.09
SHMT1-209ENST00000582653 PRR23BQ6ZRT6 265 aa21.84■■□□□ 1.09
SHMT1-209ENST00000582653 TTC16Q8NEE8 873 aa21.84■■□□□ 1.09
SHMT1-209ENST00000582653 GCNT4Q9P109 453 aa21.84■■□□□ 1.09
SHMT1-209ENST00000582653 OBSL1O75147 1896 aa21.83■■□□□ 1.09
SHMT1-209ENST00000582653 TRAV19A0A0A6YYK7 116 aa21.83■■□□□ 1.09
SHMT1-209ENST00000582653 ATG13O75143 517 aa21.83■■□□□ 1.09
SHMT1-209ENST00000582653 ARSAP15289 507 aa21.83■■□□□ 1.09
SHMT1-209ENST00000582653 PTPN1P18031 435 aaKnown RBP21.83■■□□□ 1.09
SHMT1-209ENST00000582653 CDH8P55286 799 aa21.83■■□□□ 1.09
SHMT1-209ENST00000582653 USP46P62068 366 aa21.83■■□□□ 1.09
SHMT1-209ENST00000582653 LMNB2Q03252 620 aa21.83■■□□□ 1.09
SHMT1-209ENST00000582653 BIRC3Q13489 604 aa21.83■■□□□ 1.09
SHMT1-209ENST00000582653 MTF1Q14872 753 aa21.83■■□□□ 1.09
SHMT1-209ENST00000582653 FSTL4Q6MZW2 842 aa21.83■■□□□ 1.09
SHMT1-209ENST00000582653 WDR5BQ86VZ2 330 aa21.83■■□□□ 1.09
SHMT1-209ENST00000582653 OSCP1Q8WVF1 389 aa21.83■■□□□ 1.09
SHMT1-209ENST00000582653 EXOC4Q96A65 974 aa21.83■■□□□ 1.09
SHMT1-209ENST00000582653 ECT2Q9H8V3 914 aa21.83■■□□□ 1.09
SHMT1-209ENST00000582653 FBRSL1Q9HCM7 1045 aaKnown RBP21.83■■□□□ 1.09
SHMT1-209ENST00000582653 PARD6AQ9NPB6 346 aa21.83■■□□□ 1.09
SHMT1-209ENST00000582653 FAM237AA0A1B0GTK4 181 aa21.82■■□□□ 1.08
SHMT1-209ENST00000582653 C2orf78A6NCI8 922 aa21.82■■□□□ 1.08
SHMT1-209ENST00000582653 A8MXQ7 604 aa21.82■■□□□ 1.08
SHMT1-209ENST00000582653 LRP3O75074 770 aa21.82■■□□□ 1.08
SHMT1-209ENST00000582653 STAU1O95793 577 aaKnown RBP21.82■■□□□ 1.08
SHMT1-209ENST00000582653 C4BPAP04003 597 aaKnown RBP21.82■■□□□ 1.08
SHMT1-209ENST00000582653 CKMP06732 381 aa21.82■■□□□ 1.08
SHMT1-209ENST00000582653 HDCP19113 662 aa21.82■■□□□ 1.08
SHMT1-209ENST00000582653 DRD1P21728 446 aa21.82■■□□□ 1.08
SHMT1-209ENST00000582653 ATICP31939 592 aa21.82■■□□□ 1.08
SHMT1-209ENST00000582653 GJA4P35212 333 aa21.82■■□□□ 1.08
SHMT1-209ENST00000582653 ATXN1P54253 815 aaKnown RBP21.82■■□□□ 1.08
SHMT1-209ENST00000582653 CACNA2D1P54289 1103 aa21.82■■□□□ 1.08
SHMT1-209ENST00000582653 CLDN10P78369 228 aa21.82■■□□□ 1.08
SHMT1-209ENST00000582653 ZNF77Q15935 545 aa21.82■■□□□ 1.08
SHMT1-209ENST00000582653 HEATR6Q6AI08 1181 aaKnown RBP21.82■■□□□ 1.08
SHMT1-209ENST00000582653 DENND5BQ6ZUT9 1274 aa21.82■■□□□ 1.08
SHMT1-209ENST00000582653 SLC9A9Q8IVB4 645 aa21.82■■□□□ 1.08
SHMT1-209ENST00000582653 ARL14EPQ8N8R7 260 aaPredicted RBP21.82■■□□□ 1.08
SHMT1-209ENST00000582653 SYAP1Q96A49 352 aaPredicted RBP21.82■■□□□ 1.08
SHMT1-209ENST00000582653 GOLPH3LQ9H4A5 285 aa21.82■■□□□ 1.08
SHMT1-209ENST00000582653 SMYD3Q9H7B4 428 aa21.82■■□□□ 1.08
SHMT1-209ENST00000582653 GDPD2Q9HCC8 539 aa21.82■■□□□ 1.08
SHMT1-209ENST00000582653 DUS2Q9NX74 493 aaKnown RBP21.82■■□□□ 1.08
SHMT1-209ENST00000582653 EHD2Q9NZN4 543 aa21.82■■□□□ 1.08
SHMT1-209ENST00000582653 USP18Q9UMW8 372 aa21.82■■□□□ 1.08
SHMT1-209ENST00000582653 KIF26AQ9ULI4 1882 aaPredicted RBP21.81■■□□□ 1.08
SHMT1-209ENST00000582653 CCDC163A0A0D9SF12 145 aa21.81■■□□□ 1.08
SHMT1-209ENST00000582653 PDXKO00764 312 aa21.81■■□□□ 1.08
SHMT1-209ENST00000582653 CLSTN1O94985 981 aa21.81■■□□□ 1.08
SHMT1-209ENST00000582653 VNN1O95497 513 aa21.81■■□□□ 1.08
SHMT1-209ENST00000582653 NR3C1P04150 777 aa21.81■■□□□ 1.08
SHMT1-209ENST00000582653 MYL1P05976 194 aa21.81■■□□□ 1.08
SHMT1-209ENST00000582653 TCF3P15923 654 aa21.81■■□□□ 1.08
SHMT1-209ENST00000582653 PFKLP17858 780 aa21.81■■□□□ 1.08
SHMT1-209ENST00000582653 RAP1GAPP47736 663 aa21.81■■□□□ 1.08
SHMT1-209ENST00000582653 SPEM2Q0P670 501 aa21.81■■□□□ 1.08
SHMT1-209ENST00000582653 SRSF5Q13243 272 aaKnown RBP21.81■■□□□ 1.08
SHMT1-209ENST00000582653 NCOA4Q13772 614 aa21.81■■□□□ 1.08
SHMT1-209ENST00000582653 CEP135Q66GS9 1140 aa21.81■■□□□ 1.08
SHMT1-209ENST00000582653 PKN3Q6P5Z2 889 aa21.81■■□□□ 1.08
SHMT1-209ENST00000582653 P2RY13Q9BPV8 354 aa21.81■■□□□ 1.08
SHMT1-209ENST00000582653 TMEM30AQ9NV96 361 aa21.81■■□□□ 1.08
SHMT1-209ENST00000582653 MAPK8IP1Q9UQF2 711 aa21.81■■□□□ 1.08
SHMT1-209ENST00000582653 MED19A0JLT2 244 aaPredicted RBP21.8■■□□□ 1.08
SHMT1-209ENST00000582653 F8VP50 259 aa21.8■■□□□ 1.08
SHMT1-209ENST00000582653 CLDN5O00501 218 aa21.8■■□□□ 1.08
SHMT1-209ENST00000582653 TRIM66O15016 1216 aa21.8■■□□□ 1.08
SHMT1-209ENST00000582653 EGFP01133 1207 aa21.8■■□□□ 1.08
SHMT1-209ENST00000582653 ANXA13P27216 316 aa21.8■■□□□ 1.08
SHMT1-209ENST00000582653 HOXC13P31276 330 aa21.8■■□□□ 1.08
SHMT1-209ENST00000582653 PPP3CCP48454 512 aa21.8■■□□□ 1.08
SHMT1-209ENST00000582653 PDE6CP51160 858 aa21.8■■□□□ 1.08
SHMT1-209ENST00000582653 DPYDQ12882 1025 aa21.8■■□□□ 1.08
SHMT1-209ENST00000582653 ZNF699Q32M78 642 aa21.8■■□□□ 1.08
SHMT1-209ENST00000582653 FBXO43Q4G163 708 aa21.8■■□□□ 1.08
SHMT1-209ENST00000582653 SCARA5Q6ZMJ2 495 aa21.8■■□□□ 1.08
SHMT1-209ENST00000582653 KRBA2Q6ZNG9 492 aa21.8■■□□□ 1.08
SHMT1-209ENST00000582653 CPA6Q8N4T0 437 aa21.8■■□□□ 1.08
SHMT1-209ENST00000582653 TMEM174Q8WUU8 243 aa21.8■■□□□ 1.08
SHMT1-209ENST00000582653 C8orf48Q96LL4 319 aa21.8■■□□□ 1.08
SHMT1-209ENST00000582653 TTLL2Q9BWV7 592 aa21.8■■□□□ 1.08
SHMT1-209ENST00000582653 B3GNT5Q9BYG0 378 aa21.8■■□□□ 1.08
SHMT1-209ENST00000582653 ZNF518BQ9C0D4 1074 aa21.8■■□□□ 1.08
SHMT1-209ENST00000582653 SCAND2PQ9GZW5 306 aaPredicted RBP21.8■■□□□ 1.08
SHMT1-209ENST00000582653 SDCBP2Q9H190 292 aa21.8■■□□□ 1.08
SHMT1-209ENST00000582653 TRPM5Q9NZQ8 1165 aa21.8■■□□□ 1.08
SHMT1-209ENST00000582653 ARHGAP26Q9UNA1 814 aa21.8■■□□□ 1.08
SHMT1-209ENST00000582653 ZNF638Q14966 1978 aaKnown RBP21.79■■□□□ 1.08
SHMT1-209ENST00000582653 IFNAR2P48551 515 aa21.79■■□□□ 1.08
SHMT1-209ENST00000582653 AP3M2P53677 418 aa21.79■■□□□ 1.08
SHMT1-209ENST00000582653 NOP14P78316 857 aaKnown RBP21.79■■□□□ 1.08
SHMT1-209ENST00000582653 NR1H3Q13133 447 aa21.79■■□□□ 1.08
SHMT1-209ENST00000582653 KCNB1Q14721 858 aa21.79■■□□□ 1.08
SHMT1-209ENST00000582653 EML3Q32P44 896 aa21.79■■□□□ 1.08
SHMT1-209ENST00000582653 ZNF667Q5HYK9 610 aa21.79■■□□□ 1.08
SHMT1-209ENST00000582653 CAMKK1Q8N5S9 505 aa21.79■■□□□ 1.08
SHMT1-209ENST00000582653 B3GALNT2Q8NCR0 500 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms