RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 LINC00597Q9H2U6 94 aa11.34□□□□□ -0.59
RFFL-209ENST00000581265 CRTAC1Q9NQ79 661 aa11.34□□□□□ -0.59
RFFL-209ENST00000581265 HSPBP1Q9NZL4 362 aa11.34□□□□□ -0.59
RFFL-209ENST00000581265 EBF1Q9UH73 591 aa11.34□□□□□ -0.59
RFFL-209ENST00000581265 ARHGAP26Q9UNA1 814 aa11.34□□□□□ -0.59
RFFL-209ENST00000581265 WNT6Q9Y6F9 365 aa11.34□□□□□ -0.59
RFFL-209ENST00000581265 C2orf78A6NCI8 922 aa11.33□□□□□ -0.6
RFFL-209ENST00000581265 SRRM3A6NNA2 597 aaPredicted RBP11.33□□□□□ -0.6
RFFL-209ENST00000581265 PDGFRBP09619 1106 aa11.33□□□□□ -0.6
RFFL-209ENST00000581265 CCDC192P0DO97 292 aa11.33□□□□□ -0.6
RFFL-209ENST00000581265 WARSP23381 471 aaKnown RBP11.33□□□□□ -0.6
RFFL-209ENST00000581265 BDNFP23560 247 aa11.33□□□□□ -0.6
RFFL-209ENST00000581265 GRIK1P39086 918 aa11.33□□□□□ -0.6
RFFL-209ENST00000581265 PPP3CCP48454 512 aa11.33□□□□□ -0.6
RFFL-209ENST00000581265 IFNAR2P48551 515 aa11.33□□□□□ -0.6
RFFL-209ENST00000581265 PDE6CP51160 858 aa11.33□□□□□ -0.6
RFFL-209ENST00000581265 NOVA1P51513 510 aaKnown RBP11.33□□□□□ -0.6
RFFL-209ENST00000581265 AMPD3Q01432 767 aa11.33□□□□□ -0.6
RFFL-209ENST00000581265 KCNB1Q14721 858 aa11.33□□□□□ -0.6
RFFL-209ENST00000581265 CCDC6Q16204 474 aa11.33□□□□□ -0.6
RFFL-209ENST00000581265 PLK5Q496M5 336 aa11.33□□□□□ -0.6
RFFL-209ENST00000581265 CNNM4Q6P4Q7 775 aa11.33□□□□□ -0.6
RFFL-209ENST00000581265 DENND5BQ6ZUT9 1274 aa11.33□□□□□ -0.6
RFFL-209ENST00000581265 EPM2AIP1Q7L775 607 aaPredicted RBP11.33□□□□□ -0.6
RFFL-209ENST00000581265 TRAPPC11Q7Z392 1133 aa11.33□□□□□ -0.6
RFFL-209ENST00000581265 LINC00301Q8NCQ3 95 aa11.33□□□□□ -0.6
RFFL-209ENST00000581265 CCDC26Q8TAB7 109 aa11.33□□□□□ -0.6
RFFL-209ENST00000581265 MYCBPAPQ8TBZ2 947 aa11.33□□□□□ -0.6
RFFL-209ENST00000581265 ZNF507Q8TCN5 953 aa11.33□□□□□ -0.6
RFFL-209ENST00000581265 ZCCHC14Q8WYQ9 949 aaKnown RBP11.33□□□□□ -0.6
RFFL-209ENST00000581265 HPS3Q969F9 1004 aa11.33□□□□□ -0.6
RFFL-209ENST00000581265 MYLPFQ96A32 169 aa11.33□□□□□ -0.6
RFFL-209ENST00000581265 TTLL2Q9BWV7 592 aa11.33□□□□□ -0.6
RFFL-209ENST00000581265 CUEDC2Q9H467 287 aa11.33□□□□□ -0.6
RFFL-209ENST00000581265 POLR3BQ9NW08 1133 aaPredicted RBP11.33□□□□□ -0.6
RFFL-209ENST00000581265 EHD2Q9NZN4 543 aa11.33□□□□□ -0.6
RFFL-209ENST00000581265 OBSL1O75147 1896 aa11.33□□□□□ -0.6
RFFL-209ENST00000581265 ZNF840PA6NDX5 716 aa11.32□□□□□ -0.6
RFFL-209ENST00000581265 EIF3DO15371 548 aaKnown RBP eCLIP11.32□□□□□ -0.6
RFFL-209ENST00000581265 TGFB1I1O43294 461 aa11.32□□□□□ -0.6
RFFL-209ENST00000581265 STX6O43752 255 aa11.32□□□□□ -0.6
RFFL-209ENST00000581265 PPP6R2O75170 966 aa11.32□□□□□ -0.6
RFFL-209ENST00000581265 TACC1O75410 805 aa11.32□□□□□ -0.6
RFFL-209ENST00000581265 APBB3O95704 486 aa11.32□□□□□ -0.6
RFFL-209ENST00000581265 CST3P01034 146 aaPredicted RBP11.32□□□□□ -0.6
RFFL-209ENST00000581265 GNL1P36915 607 aaPredicted RBP11.32□□□□□ -0.6
RFFL-209ENST00000581265 USP46P62068 366 aa11.32□□□□□ -0.6
RFFL-209ENST00000581265 PSMC1P62191 440 aaKnown RBP11.32□□□□□ -0.6
RFFL-209ENST00000581265 SNRPFP62306 86 aaKnown RBP11.32□□□□□ -0.6
RFFL-209ENST00000581265 NOP14P78316 857 aaKnown RBP11.32□□□□□ -0.6
RFFL-209ENST00000581265 ZXDBP98169 803 aa11.32□□□□□ -0.6
RFFL-209ENST00000581265 DMC1Q14565 340 aa11.32□□□□□ -0.6
RFFL-209ENST00000581265 STK38Q15208 465 aa11.32□□□□□ -0.6
RFFL-209ENST00000581265 RNF43Q68DV7 783 aa11.32□□□□□ -0.6
RFFL-209ENST00000581265 ADGRG2Q8IZP9 1017 aa11.32□□□□□ -0.6
RFFL-209ENST00000581265 RPLP0P6Q8NHW5 317 aa11.32□□□□□ -0.6
RFFL-209ENST00000581265 ACDQ96AP0 544 aa11.32□□□□□ -0.6
RFFL-209ENST00000581265 PCED1BQ96HM7 432 aa11.32□□□□□ -0.6
RFFL-209ENST00000581265 C8orf48Q96LL4 319 aa11.32□□□□□ -0.6
RFFL-209ENST00000581265 HHIPQ96QV1 700 aa11.32□□□□□ -0.6
RFFL-209ENST00000581265 MMS19Q96T76 1030 aa11.32□□□□□ -0.6
RFFL-209ENST00000581265 LSM14BQ9BX40 385 aaKnown RBP11.32□□□□□ -0.6
RFFL-209ENST00000581265 ADAM33Q9BZ11 813 aa11.32□□□□□ -0.6
RFFL-209ENST00000581265 DUSP15Q9H1R2 295 aaPredicted RBP11.32□□□□□ -0.6
RFFL-209ENST00000581265 RXFP3Q9NSD7 469 aa11.32□□□□□ -0.6
RFFL-209ENST00000581265 TRPM5Q9NZQ8 1165 aa11.32□□□□□ -0.6
RFFL-209ENST00000581265 GREB1Q4ZG55 1949 aa11.31□□□□□ -0.6
RFFL-209ENST00000581265 ANAPC1Q9H1A4 1944 aa11.31□□□□□ -0.6
RFFL-209ENST00000581265 TRIM66O15016 1216 aa11.31□□□□□ -0.6
RFFL-209ENST00000581265 SPTLC2O15270 562 aa11.31□□□□□ -0.6
RFFL-209ENST00000581265 NFATC1O95644 943 aa11.31□□□□□ -0.6
RFFL-209ENST00000581265 OLFM2O95897 454 aa11.31□□□□□ -0.6
RFFL-209ENST00000581265 TNNI1P19237 187 aa11.31□□□□□ -0.6
RFFL-209ENST00000581265 SPINK2P20155 84 aa11.31□□□□□ -0.6
RFFL-209ENST00000581265 ANXA13P27216 316 aa11.31□□□□□ -0.6
RFFL-209ENST00000581265 OPRD1P41143 372 aa11.31□□□□□ -0.6
RFFL-209ENST00000581265 SLC7A9P82251 487 aa11.31□□□□□ -0.6
RFFL-209ENST00000581265 CYP27A1Q02318 531 aa11.31□□□□□ -0.6
RFFL-209ENST00000581265 ZNF252P-AS1Q0IIN9 211 aa11.31□□□□□ -0.6
RFFL-209ENST00000581265 PSMD6Q15008 389 aa11.31□□□□□ -0.6
RFFL-209ENST00000581265 SNRNP35Q16560 246 aaKnown RBP11.31□□□□□ -0.6
RFFL-209ENST00000581265 IQUBQ8NA54 791 aa11.31□□□□□ -0.6
RFFL-209ENST00000581265 RDH13Q8NBN7 331 aa11.31□□□□□ -0.6
RFFL-209ENST00000581265 TTC16Q8NEE8 873 aa11.31□□□□□ -0.6
RFFL-209ENST00000581265 USP33Q8TEY7 942 aa11.31□□□□□ -0.6
RFFL-209ENST00000581265 C7orf25Q9BPX7 421 aa11.31□□□□□ -0.6
RFFL-209ENST00000581265 MRPL45Q9BRJ2 306 aaKnown RBP11.31□□□□□ -0.6
RFFL-209ENST00000581265 RNF38Q9H0F5 515 aa11.31□□□□□ -0.6
RFFL-209ENST00000581265 VPS45Q9NRW7 570 aa11.31□□□□□ -0.6
RFFL-209ENST00000581265 AGPAT3Q9NRZ7 376 aa11.31□□□□□ -0.6
RFFL-209ENST00000581265 TFIP11Q9UBB9 837 aaKnown RBP11.31□□□□□ -0.6
RFFL-209ENST00000581265 NME7Q9Y5B8 376 aa11.31□□□□□ -0.6
RFFL-209ENST00000581265 ANKRD11Q6UB99 2663 aaPredicted RBP11.31□□□□□ -0.6
RFFL-209ENST00000581265 A0A0A0MRY4 1105 aa11.3□□□□□ -0.6
RFFL-209ENST00000581265 EIF4E1BA6NMX2 242 aaKnown RBP11.3□□□□□ -0.6
RFFL-209ENST00000581265 F8VP50 259 aa11.3□□□□□ -0.6
RFFL-209ENST00000581265 K7EQS6 105 aa11.3□□□□□ -0.6
RFFL-209ENST00000581265 LEFTY2O00292 366 aa11.3□□□□□ -0.6
RFFL-209ENST00000581265 DCLK1O15075 740 aa11.3□□□□□ -0.6
RFFL-209ENST00000581265 RHOBTB1O94844 696 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms