RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 TMEM39AQ9NV64 488 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 KANSL3Q9P2N6 904 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 LCMT1Q9UIC8 334 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 TMEM59LQ9UK28 342 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 CDH9Q9ULB4 789 aa11.08□□□□□ -0.64
SS18-217ENST00000580958 TTC7AQ9ULT0 858 aaPredicted RBP11.08□□□□□ -0.64
SS18-217ENST00000580958 MYBPHLA2RUH7 354 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 F8VP50 259 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 KRIT1O00522 736 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 PAPSS1O43252 624 aaPredicted RBP11.07□□□□□ -0.64
SS18-217ENST00000580958 PARNO95453 639 aaKnown RBP11.07□□□□□ -0.64
SS18-217ENST00000580958 CYP11A1P05108 521 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 CLTBP09497 229 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 TCF4P15884 667 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 H2AFXP16104 143 aaPredicted RBP11.07□□□□□ -0.64
SS18-217ENST00000580958 TYMPP19971 482 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 OR1G1P47890 313 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 CTCFP49711 727 aaPredicted RBP11.07□□□□□ -0.64
SS18-217ENST00000580958 CDR1P51861 262 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 MRPS25P82663 173 aaKnown RBP11.07□□□□□ -0.64
SS18-217ENST00000580958 RBM10P98175 930 aaKnown RBP11.07□□□□□ -0.64
SS18-217ENST00000580958 SLC6A3Q01959 620 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 PIGHQ14442 188 aaPredicted RBP11.07□□□□□ -0.64
SS18-217ENST00000580958 LRRC26Q2I0M4 334 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 FBXO38Q6PIJ6 1188 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 FAM43BQ6ZT52 329 aaPredicted RBP11.07□□□□□ -0.64
SS18-217ENST00000580958 PAQR9Q6ZVX9 377 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 ADAT2Q7Z6V5 191 aaKnown RBP11.07□□□□□ -0.64
SS18-217ENST00000580958 TMEM110Q86TL2 294 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 NPAS4Q8IUM7 802 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 RHOT1Q8IXI2 618 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 KLHL7Q8IXQ5 586 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 ABI1Q8IZP0 508 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 STK32AQ8WU08 396 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 PIWIL1Q96J94 861 aaKnown RBP11.07□□□□□ -0.64
SS18-217ENST00000580958 CASD1Q96PB1 797 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 KRT12Q99456 494 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 LRRC1Q9BTT6 524 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 AP1M1Q9BXS5 423 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 DUSP16Q9BY84 665 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 NRDE2Q9H7Z3 1164 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 DNAJB4Q9UDY4 337 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 DSEQ9UL01 958 aa11.07□□□□□ -0.64
SS18-217ENST00000580958 PRG3Q9Y2Y8 225 aaPredicted RBP11.07□□□□□ -0.64
SS18-217ENST00000580958 ARHGEF37A1IGU5 675 aa11.06□□□□□ -0.64
SS18-217ENST00000580958 CCDC188H7C350 402 aa11.06□□□□□ -0.64
SS18-217ENST00000580958 TMEM189-UBE2V1I3L0A0 370 aa11.06□□□□□ -0.64
SS18-217ENST00000580958 XPO1O14980 1071 aaKnown RBP11.06□□□□□ -0.64
SS18-217ENST00000580958 GRAP2O75791 330 aa11.06□□□□□ -0.64
SS18-217ENST00000580958 HSPA1AP0DMV8 641 aaKnown RBP11.06□□□□□ -0.64
SS18-217ENST00000580958 HSPA1BP0DMV9 641 aaKnown RBP11.06□□□□□ -0.64
SS18-217ENST00000580958 LCP1P13796 627 aa11.06□□□□□ -0.64
SS18-217ENST00000580958 NPR3P17342 541 aa11.06□□□□□ -0.64
SS18-217ENST00000580958 GPD1P21695 349 aa11.06□□□□□ -0.64
SS18-217ENST00000580958 PCSK1P29120 753 aa11.06□□□□□ -0.64
SS18-217ENST00000580958 PLA2G4AP47712 749 aa11.06□□□□□ -0.64
SS18-217ENST00000580958 RPL34P49207 117 aaKnown RBP11.06□□□□□ -0.64
SS18-217ENST00000580958 SNX16P57768 344 aa11.06□□□□□ -0.64
SS18-217ENST00000580958 INTS6LQ5JSJ4 861 aaKnown RBP11.06□□□□□ -0.64
SS18-217ENST00000580958 OVOS1Q6IE37 1185 aa11.06□□□□□ -0.64
SS18-217ENST00000580958 CCDC70Q6NSX1 233 aa11.06□□□□□ -0.64
SS18-217ENST00000580958 C8orf74Q6P047 294 aa11.06□□□□□ -0.64
SS18-217ENST00000580958 OLFML1Q6UWY5 402 aa11.06□□□□□ -0.64
SS18-217ENST00000580958 FAM35AQ86V20 835 aa11.06□□□□□ -0.64
SS18-217ENST00000580958 SLC13A5Q86YT5 568 aaPredicted RBP11.06□□□□□ -0.64
SS18-217ENST00000580958 KATNAL2Q8IYT4 538 aa11.06□□□□□ -0.64
SS18-217ENST00000580958 NIPA2Q8N8Q9 360 aa11.06□□□□□ -0.64
SS18-217ENST00000580958 MYCBPAPQ8TBZ2 947 aa11.06□□□□□ -0.64
SS18-217ENST00000580958 FNIP1Q8TF40 1166 aa11.06□□□□□ -0.64
SS18-217ENST00000580958 CLEC4CQ8WTT0 213 aa11.06□□□□□ -0.64
SS18-217ENST00000580958 RXFP2Q8WXD0 754 aa11.06□□□□□ -0.64
SS18-217ENST00000580958 MYLPFQ96A32 169 aa11.06□□□□□ -0.64
SS18-217ENST00000580958 NAP1L3Q99457 506 aaPredicted RBP11.06□□□□□ -0.64
SS18-217ENST00000580958 CYLDQ9NQC7 956 aa11.06□□□□□ -0.64
SS18-217ENST00000580958 KRT82Q9NSB4 513 aa11.06□□□□□ -0.64
SS18-217ENST00000580958 KLHL11Q9NVR0 708 aa11.06□□□□□ -0.64
SS18-217ENST00000580958 RAB21Q9UL25 225 aa11.06□□□□□ -0.64
SS18-217ENST00000580958 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.06□□□□□ -0.64
SS18-217ENST00000580958 CEP350Q5VT06 3117 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 COL4A6Q14031 1691 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 TARSL2A2RTX5 802 aaKnown RBP11.05□□□□□ -0.64
SS18-217ENST00000580958 C2CD4BA6NLJ0 364 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 TBKBP1A7MCY6 615 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 HOXA2O43364 376 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 AP1G2O75843 785 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 BEST1O76090 585 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 KRT1P04264 644 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 FAM200BP0CF97 657 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 RFC2P35250 354 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 FLT3P36888 993 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 ACADSBP45954 432 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 RABGGTBP53611 331 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 BCAR1P56945 870 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 VSNL1P62760 191 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 SLC7A5Q01650 507 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 PLCB3Q01970 1234 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 LLGL1Q15334 1064 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 TAF5Q15542 800 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 CLUL1Q15846 466 aa11.05□□□□□ -0.64
SS18-217ENST00000580958 ATP13A4Q4VNC1 1196 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms