RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 DMAP1Q9NPF5 467 aaPredicted RBP17.04■□□□□ 0.32
SS18-211ENST00000578954 WDR35Q9P2L0 1181 aa17.04■□□□□ 0.32
SS18-211ENST00000578954 AFF4Q9UHB7 1163 aaKnown RBP17.04■□□□□ 0.32
SS18-211ENST00000578954 STRIP2Q9ULQ0 834 aa17.04■□□□□ 0.32
SS18-211ENST00000578954 MAFFQ9ULX9 164 aa17.04■□□□□ 0.32
SS18-211ENST00000578954 TFR2Q9UP52 801 aa17.04■□□□□ 0.32
SS18-211ENST00000578954 C2CD2LO14523 706 aa17.03■□□□□ 0.32
SS18-211ENST00000578954 KRT86O43790 486 aa17.03■□□□□ 0.32
SS18-211ENST00000578954 GABBR2O75899 941 aa17.03■□□□□ 0.32
SS18-211ENST00000578954 MTA2O94776 668 aa17.03■□□□□ 0.32
SS18-211ENST00000578954 ERBB2P04626 1255 aa17.03■□□□□ 0.32
SS18-211ENST00000578954 RPL17P18621 184 aaKnown RBP17.03■□□□□ 0.32
SS18-211ENST00000578954 ABCB4P21439 1286 aa17.03■□□□□ 0.32
SS18-211ENST00000578954 OR1D2P34982 312 aa17.03■□□□□ 0.32
SS18-211ENST00000578954 NDUFV1P49821 464 aa17.03■□□□□ 0.32
SS18-211ENST00000578954 HADHBP55084 474 aaKnown RBP17.03■□□□□ 0.32
SS18-211ENST00000578954 ERVFC1P60507 584 aa17.03■□□□□ 0.32
SS18-211ENST00000578954 CAMK1Q14012 370 aa17.03■□□□□ 0.32
SS18-211ENST00000578954 RAB41Q5JT25 222 aa17.03■□□□□ 0.32
SS18-211ENST00000578954 LIN9Q5TKA1 542 aa17.03■□□□□ 0.32
SS18-211ENST00000578954 PLEKHA7Q6IQ23 1121 aa17.03■□□□□ 0.32
SS18-211ENST00000578954 RNF19BQ6ZMZ0 732 aa17.03■□□□□ 0.32
SS18-211ENST00000578954 C17orf53Q8N3J3 647 aaPredicted RBP17.03■□□□□ 0.32
SS18-211ENST00000578954 ZNF461Q8TAF7 563 aa17.03■□□□□ 0.32
SS18-211ENST00000578954 AUTS2Q8WXX7 1259 aa17.03■□□□□ 0.32
SS18-211ENST00000578954 ZNF653Q96CK0 615 aa17.03■□□□□ 0.32
SS18-211ENST00000578954 C18orf8Q96DM3 657 aa17.03■□□□□ 0.32
SS18-211ENST00000578954 ARHGEF26Q96DR7 871 aa17.03■□□□□ 0.32
SS18-211ENST00000578954 MCRS1Q96EZ8 462 aa17.03■□□□□ 0.32
SS18-211ENST00000578954 C8orf48Q96LL4 319 aa17.03■□□□□ 0.32
SS18-211ENST00000578954 RHOBTB2Q9BYZ6 727 aa17.03■□□□□ 0.32
SS18-211ENST00000578954 NGRNQ9NPE2 291 aaKnown RBP17.03■□□□□ 0.32
SS18-211ENST00000578954 TLR9Q9NR96 1032 aa17.03■□□□□ 0.32
SS18-211ENST00000578954 TRMT1Q9NXH9 659 aaKnown RBP17.03■□□□□ 0.32
SS18-211ENST00000578954 ABI2Q9NYB9 513 aaPredicted RBP17.03■□□□□ 0.32
SS18-211ENST00000578954 TNRC18O15417 2968 aaPredicted RBP17.02■□□□□ 0.32
SS18-211ENST00000578954 A0A1W2PPC1 479 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 ESPNB1AK53 854 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 E5RJQ4 531 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 TRIM66O15016 1216 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 GRM6O15303 877 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 TEX28O15482 410 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 ABL1P00519 1130 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 C1RP00736 705 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 HAPLN1P10915 354 aaPredicted RBP17.02■□□□□ 0.32
SS18-211ENST00000578954 RRM1P23921 792 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 CYP2F1P24903 491 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 DNAJB2P25686 324 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 MSNP26038 577 aaKnown RBP17.02■□□□□ 0.32
SS18-211ENST00000578954 SCNN1AP37088 669 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 MAP3K7CLP57077 242 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 SNX16P57768 344 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 ZNF268Q14587 947 aaPredicted RBP17.02■□□□□ 0.32
SS18-211ENST00000578954 SMC1AQ14683 1233 aaKnown RBP17.02■□□□□ 0.32
SS18-211ENST00000578954 ARHGAP29Q52LW3 1261 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 PDE12Q6L8Q7 609 aaKnown RBP17.02■□□□□ 0.32
SS18-211ENST00000578954 TMC7Q7Z402 723 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 XYLT1Q86Y38 959 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 ZDHHC17Q8IUH5 632 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 RHOT2Q8IXI1 618 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 SCML4Q8N228 414 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 ATAD1Q8NBU5 361 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 C3orf20Q8ND61 904 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 CALR3Q96L12 384 aaKnown RBP17.02■□□□□ 0.32
SS18-211ENST00000578954 CEP295NLQ96MC4 621 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 TCF25Q9BQ70 676 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 LMAN2LQ9H0V9 348 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 CRISPLD1Q9H336 500 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 UVRAGQ9P2Y5 699 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 TJP2Q9UDY2 1190 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 TRIM10Q9UDY6 481 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 CNOT8Q9UFF9 292 aaKnown RBP17.02■□□□□ 0.32
SS18-211ENST00000578954 SALL4Q9UJQ4 1053 aa17.02■□□□□ 0.32
SS18-211ENST00000578954 MYH10P35580 1976 aa17.01■□□□□ 0.31
SS18-211ENST00000578954 C2orf71A6NGG8 1288 aa17.01■□□□□ 0.31
SS18-211ENST00000578954 F8VP50 259 aa17.01■□□□□ 0.31
SS18-211ENST00000578954 CXCL14O95715 111 aa17.01■□□□□ 0.31
SS18-211ENST00000578954 CNPP09543 421 aaKnown RBP17.01■□□□□ 0.31
SS18-211ENST00000578954 ATF2P15336 505 aa17.01■□□□□ 0.31
SS18-211ENST00000578954 RGS7P49802 495 aa17.01■□□□□ 0.31
SS18-211ENST00000578954 ARPP19P56211 112 aa17.01■□□□□ 0.31
SS18-211ENST00000578954 MLLT1Q03111 559 aaPredicted RBP17.01■□□□□ 0.31
SS18-211ENST00000578954 GPM6BQ13491 265 aa17.01■□□□□ 0.31
SS18-211ENST00000578954 PPP1R15BQ5SWA1 713 aa17.01■□□□□ 0.31
SS18-211ENST00000578954 PPP2R2DQ66LE6 453 aa17.01■□□□□ 0.31
SS18-211ENST00000578954 CHRDL2Q6WN34 429 aa17.01■□□□□ 0.31
SS18-211ENST00000578954 RNF10Q8N5U6 811 aaKnown RBP17.01■□□□□ 0.31
SS18-211ENST00000578954 MRPL43Q8N983 215 aaKnown RBP17.01■□□□□ 0.31
SS18-211ENST00000578954 PGLYRP2Q96PD5 576 aa17.01■□□□□ 0.31
SS18-211ENST00000578954 KLHL5Q96PQ7 755 aa17.01■□□□□ 0.31
SS18-211ENST00000578954 KCNK16Q96T55 309 aa17.01■□□□□ 0.31
SS18-211ENST00000578954 LZTFL1Q9NQ48 299 aa17.01■□□□□ 0.31
SS18-211ENST00000578954 MTUS1Q9ULD2 1270 aa17.01■□□□□ 0.31
SS18-211ENST00000578954 SCINQ9Y6U3 715 aa17.01■□□□□ 0.31
SS18-211ENST00000578954 DUSP10Q9Y6W6 482 aa17.01■□□□□ 0.31
SS18-211ENST00000578954 RANBP2P49792 3224 aaKnown RBP17■□□□□ 0.31
SS18-211ENST00000578954 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17■□□□□ 0.31
SS18-211ENST00000578954 TNFRSF10BO14763 440 aa17■□□□□ 0.31
SS18-211ENST00000578954 PAPSS1O43252 624 aaPredicted RBP17■□□□□ 0.31
SS18-211ENST00000578954 ATMINO43313 823 aaPredicted RBP17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms