RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 C8orf48Q96LL4 319 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 DUSP16Q9BY84 665 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 PRKD2Q9BZL6 878 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 S1PR5Q9H228 398 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 EPHX3Q9H6B9 360 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 UBE2ZQ9H832 354 aaPredicted RBP9.07□□□□□ -0.96
NUP88-211ENST00000575976 CSNK1G1Q9HCP0 422 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 DMAP1Q9NPF5 467 aaPredicted RBP9.07□□□□□ -0.96
NUP88-211ENST00000575976 HESX1Q9UBX0 185 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 CDH22Q9UJ99 828 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 MYO6Q9UM54 1294 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.07□□□□□ -0.96
NUP88-211ENST00000575976 SLC38A8A6NNN8 435 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 HHLA1C9JL84 531 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 H3BQ06 376 aaPredicted RBP9.06□□□□□ -0.96
NUP88-211ENST00000575976 M0QYV0 167 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 TULP2O00295 520 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 TRIM66O15016 1216 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 MED7O43513 233 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 PAPLNO95428 1278 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 MMEP08473 750 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 FERP16591 822 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 NPR3P17342 541 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 KCNA5P22460 613 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 ANXA13P27216 316 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 KRT9P35527 623 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 PDE6CP51160 858 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 PDE4CQ08493 712 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 GOLGA8FQ08AF8 430 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 GOLGA8DPQ0D2H9 430 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 TBX2Q13207 712 aaPredicted RBP9.06□□□□□ -0.96
NUP88-211ENST00000575976 PLD1Q13393 1074 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 MTMR3Q13615 1198 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 TRIM14Q14142 442 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 VEPH1Q14D04 833 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 ASIC2Q16515 512 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 SFMBT2Q5VUG0 894 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 TAF3Q5VWG9 929 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 E4F1Q66K89 784 aaPredicted RBP9.06□□□□□ -0.96
NUP88-211ENST00000575976 GRASPQ7Z6J2 395 aaPredicted RBP9.06□□□□□ -0.96
NUP88-211ENST00000575976 DNAJB7Q7Z6W7 309 aaPredicted RBP9.06□□□□□ -0.96
NUP88-211ENST00000575976 GPR149Q86SP6 731 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 HS6ST3Q8IZP7 471 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 ZNF397Q8NF99 534 aaPredicted RBP9.06□□□□□ -0.96
NUP88-211ENST00000575976 CMASQ8NFW8 434 aaPredicted RBP9.06□□□□□ -0.96
NUP88-211ENST00000575976 EPS8L1Q8TE68 723 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 SLC20A1Q8WUM9 679 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 SMG7Q92540 1137 aaKnown RBP9.06□□□□□ -0.96
NUP88-211ENST00000575976 SECISBP2LQ93073 1101 aaKnown RBP9.06□□□□□ -0.96
NUP88-211ENST00000575976 HLA-CQ95604 372 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 PSMG2Q969U7 264 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 SPATA17Q96L03 361 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 ZNF512Q96ME7 567 aaPredicted RBP9.06□□□□□ -0.96
NUP88-211ENST00000575976 NECAB3Q96P71 396 aaPredicted RBP9.06□□□□□ -0.96
NUP88-211ENST00000575976 PIDD1Q9HB75 910 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 HCFC1R1Q9NWW0 138 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 AIPL1Q9NZN9 384 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 DNMT3BQ9UBC3 853 aaKnown RBP9.06□□□□□ -0.96
NUP88-211ENST00000575976 CD207Q9UJ71 328 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 NOCTQ9UK39 431 aaKnown RBP9.06□□□□□ -0.96
NUP88-211ENST00000575976 COG5Q9UP83 839 aa9.06□□□□□ -0.96
NUP88-211ENST00000575976 LUC7L2Q9Y383 392 aaKnown RBP9.06□□□□□ -0.96
NUP88-211ENST00000575976 TNFRSF10BO14763 440 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 XPO1O14980 1071 aaKnown RBP9.05□□□□□ -0.96
NUP88-211ENST00000575976 XYLBO75191 536 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 POU2F2P09086 479 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 CCDC172P0C7W6 258 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 SETSIPP0DME0 302 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 CSH1P0DML2 217 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 CSH2P0DML3 217 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 SKILP12757 684 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 HMGA1P17096 107 aaKnown RBP9.05□□□□□ -0.96
NUP88-211ENST00000575976 PTPN2P17706 415 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 CHRNB2P17787 502 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 GPD2P43304 727 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 BCAT1P54687 386 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 ADKP55263 362 aaKnown RBP9.05□□□□□ -0.96
NUP88-211ENST00000575976 USP46P62068 366 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 NTHL1P78549 312 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 ITIH3Q06033 890 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 BST2Q10589 180 aaKnown RBP9.05□□□□□ -0.96
NUP88-211ENST00000575976 CES5AQ6NT32 575 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 CYP26C1Q6V0L0 522 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 GPRIN1Q7Z2K8 1008 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 PIGZQ86VD9 579 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 PASD1Q8IV76 773 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 NUP93Q8N1F7 819 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 ELMOD1Q8N336 334 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 WDTC1Q8N5D0 677 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 SLC35F5Q8WV83 523 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 CORO1BQ9BR76 489 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 LRRC3Q9BY71 257 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 UBXN6Q9BZV1 441 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 NUCKS1Q9H1E3 243 aaKnown RBP9.05□□□□□ -0.96
NUP88-211ENST00000575976 PDCL3Q9H2J4 239 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 ADAM7Q9H2U9 754 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 ZNF334Q9HCZ1 680 aaPredicted RBP9.05□□□□□ -0.96
NUP88-211ENST00000575976 PCDHGC3Q9UN70 934 aa9.05□□□□□ -0.96
NUP88-211ENST00000575976 MAGED2Q9UNF1 606 aaPredicted RBP9.05□□□□□ -0.96
NUP88-211ENST00000575976 ASB3Q9Y575 518 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms