RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 CLTAP09496 248 aa14.06□□□□□ -0.16
CCDC40-208ENST00000572270 CHRM1P11229 460 aaPredicted RBP14.06□□□□□ -0.16
CCDC40-208ENST00000572270 HDCP19113 662 aa14.06□□□□□ -0.16
CCDC40-208ENST00000572270 MAOBP27338 520 aa14.06□□□□□ -0.16
CCDC40-208ENST00000572270 KRT2P35908 639 aa14.06□□□□□ -0.16
CCDC40-208ENST00000572270 RPL10AP62906 217 aaKnown RBP14.06□□□□□ -0.16
CCDC40-208ENST00000572270 SEMG2Q02383 582 aa14.06□□□□□ -0.16
CCDC40-208ENST00000572270 NR5A1Q13285 461 aa14.06□□□□□ -0.16
CCDC40-208ENST00000572270 SUZ12Q15022 739 aaKnown RBP14.06□□□□□ -0.16
CCDC40-208ENST00000572270 DHCR24Q15392 516 aa14.06□□□□□ -0.16
CCDC40-208ENST00000572270 PREPLQ4J6C6 727 aaPredicted RBP14.06□□□□□ -0.16
CCDC40-208ENST00000572270 ZC2HC1CQ53FD0 456 aaPredicted RBP14.06□□□□□ -0.16
CCDC40-208ENST00000572270 SDHAF4Q5VUM1 108 aa14.06□□□□□ -0.16
CCDC40-208ENST00000572270 FILIP1Q7Z7B0 1213 aa14.06□□□□□ -0.16
CCDC40-208ENST00000572270 ZNF513Q8N8E2 541 aaPredicted RBP14.06□□□□□ -0.16
CCDC40-208ENST00000572270 MTMR9Q96QG7 549 aa14.06□□□□□ -0.16
CCDC40-208ENST00000572270 BHMT2Q9H2M3 363 aa14.06□□□□□ -0.16
CCDC40-208ENST00000572270 IL21RQ9HBE5 538 aa14.06□□□□□ -0.16
CCDC40-208ENST00000572270 DNMT3LQ9UJW3 386 aa14.06□□□□□ -0.16
CCDC40-208ENST00000572270 PCDHGB2Q9Y5G2 931 aa14.06□□□□□ -0.16
CCDC40-208ENST00000572270 AK5Q9Y6K8 562 aa14.06□□□□□ -0.16
CCDC40-208ENST00000572270 C2orf78A6NCI8 922 aa14.05□□□□□ -0.16
CCDC40-208ENST00000572270 SLC9A3R1O14745 358 aaPredicted RBP14.05□□□□□ -0.16
CCDC40-208ENST00000572270 TNFSF14O43557 240 aa14.05□□□□□ -0.16
CCDC40-208ENST00000572270 TLX3O43711 291 aaPredicted RBP14.05□□□□□ -0.16
CCDC40-208ENST00000572270 NOL4O94818 638 aa14.05□□□□□ -0.16
CCDC40-208ENST00000572270 WISP1O95388 367 aa14.05□□□□□ -0.16
CCDC40-208ENST00000572270 ADH1CP00326 375 aa14.05□□□□□ -0.16
CCDC40-208ENST00000572270 PSMA5P28066 241 aa14.05□□□□□ -0.16
CCDC40-208ENST00000572270 HNF1BP35680 557 aa14.05□□□□□ -0.16
CCDC40-208ENST00000572270 CXADRP78310 365 aa14.05□□□□□ -0.16
CCDC40-208ENST00000572270 TSPY1Q01534 308 aa14.05□□□□□ -0.16
CCDC40-208ENST00000572270 MESP2Q0VG99 397 aa14.05□□□□□ -0.16
CCDC40-208ENST00000572270 STK3Q13188 491 aa14.05□□□□□ -0.16
CCDC40-208ENST00000572270 HAUS3Q68CZ6 603 aa14.05□□□□□ -0.16
CCDC40-208ENST00000572270 NUDT18Q6ZVK8 323 aa14.05□□□□□ -0.16
CCDC40-208ENST00000572270 LRRTM3Q86VH5 581 aa14.05□□□□□ -0.16
CCDC40-208ENST00000572270 TMPRSS12Q86WS5 348 aa14.05□□□□□ -0.16
CCDC40-208ENST00000572270 ZCCHC9Q8N567 271 aaKnown RBP14.05□□□□□ -0.16
CCDC40-208ENST00000572270 KCNV2Q8TDN2 545 aa14.05□□□□□ -0.16
CCDC40-208ENST00000572270 MYRFLQ96LU7 910 aa14.05□□□□□ -0.16
CCDC40-208ENST00000572270 TSPAN18Q96SJ8 248 aa14.05□□□□□ -0.16
CCDC40-208ENST00000572270 GJB4Q9NTQ9 266 aa14.05□□□□□ -0.16
CCDC40-208ENST00000572270 GCNT4Q9P109 453 aa14.05□□□□□ -0.16
CCDC40-208ENST00000572270 FNDC3AQ9Y2H6 1198 aaKnown RBP14.05□□□□□ -0.16
CCDC40-208ENST00000572270 SNX14Q9Y5W7 946 aa14.05□□□□□ -0.16
CCDC40-208ENST00000572270 SPTA1P02549 2419 aa14.05□□□□□ -0.16
CCDC40-208ENST00000572270 PTPRQQ9UMZ3 2332 aa14.04□□□□□ -0.16
CCDC40-208ENST00000572270 A0A0A0MRY4 1105 aa14.04□□□□□ -0.16
CCDC40-208ENST00000572270 TBC1D3BA6NDS4 549 aa14.04□□□□□ -0.16
CCDC40-208ENST00000572270 LACTBL1A8MY62 500 aa14.04□□□□□ -0.16
CCDC40-208ENST00000572270 B8ZZF3 427 aa14.04□□□□□ -0.16
CCDC40-208ENST00000572270 LEFTY2O00292 366 aa14.04□□□□□ -0.16
CCDC40-208ENST00000572270 CYB561D2O14569 222 aa14.04□□□□□ -0.16
CCDC40-208ENST00000572270 NTRK1P04629 796 aa14.04□□□□□ -0.16
CCDC40-208ENST00000572270 NFICP08651 508 aa14.04□□□□□ -0.16
CCDC40-208ENST00000572270 ADH5P11766 374 aa14.04□□□□□ -0.16
CCDC40-208ENST00000572270 NDUFV2P19404 249 aa14.04□□□□□ -0.16
CCDC40-208ENST00000572270 MUTP22033 750 aa14.04□□□□□ -0.16
CCDC40-208ENST00000572270 ATP2C1P98194 919 aaPredicted RBP14.04□□□□□ -0.16
CCDC40-208ENST00000572270 MCL1Q07820 350 aa14.04□□□□□ -0.16
CCDC40-208ENST00000572270 NFE2Q16621 373 aaPredicted RBP14.04□□□□□ -0.16
CCDC40-208ENST00000572270 KYAT1Q16773 422 aa14.04□□□□□ -0.16
CCDC40-208ENST00000572270 DDR2Q16832 855 aa14.04□□□□□ -0.16
CCDC40-208ENST00000572270 SPATA1Q5VX52 437 aa14.04□□□□□ -0.16
CCDC40-208ENST00000572270 PCSK4Q6UW60 755 aa14.04□□□□□ -0.16
CCDC40-208ENST00000572270 DHRS13Q6UX07 377 aa14.04□□□□□ -0.16
CCDC40-208ENST00000572270 C12orf40Q86WS4 652 aa14.04□□□□□ -0.16
CCDC40-208ENST00000572270 ZNF274Q96GC6 653 aaPredicted RBP14.04□□□□□ -0.16
CCDC40-208ENST00000572270 PYM1Q9BRP8 204 aaKnown RBP14.04□□□□□ -0.16
CCDC40-208ENST00000572270 MIR1-1HGQ9H1L0 117 aa14.04□□□□□ -0.16
CCDC40-208ENST00000572270 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.04□□□□□ -0.16
CCDC40-208ENST00000572270 MYO18AQ92614 2054 aaKnown RBP14.03□□□□□ -0.16
CCDC40-208ENST00000572270 COL6A6A6NMZ7 2263 aa14.03□□□□□ -0.16
CCDC40-208ENST00000572270 BTBD18B2RXH4 712 aa14.03□□□□□ -0.16
CCDC40-208ENST00000572270 SLC16A4O15374 487 aa14.03□□□□□ -0.16
CCDC40-208ENST00000572270 HIP1RO75146 1068 aa14.03□□□□□ -0.16
CCDC40-208ENST00000572270 NTSR1P30989 418 aa14.03□□□□□ -0.16
CCDC40-208ENST00000572270 SRSF1Q07955 248 aaKnown RBP eCLIP14.03□□□□□ -0.16
CCDC40-208ENST00000572270 HLA-BQ31612 363 aa14.03□□□□□ -0.16
CCDC40-208ENST00000572270 C9orf57Q5W0N0 161 aa14.03□□□□□ -0.16
CCDC40-208ENST00000572270 SDE2Q6IQ49 451 aa14.03□□□□□ -0.16
CCDC40-208ENST00000572270 DBX2Q6ZNG2 339 aa14.03□□□□□ -0.16
CCDC40-208ENST00000572270 ADGRG2Q8IZP9 1017 aa14.03□□□□□ -0.16
CCDC40-208ENST00000572270 KIAA1958Q8N8K9 716 aa14.03□□□□□ -0.16
CCDC40-208ENST00000572270 SNIP1Q8TAD8 396 aaKnown RBP14.03□□□□□ -0.16
CCDC40-208ENST00000572270 LRRC15Q8TF66 581 aa14.03□□□□□ -0.16
CCDC40-208ENST00000572270 KCNB2Q92953 911 aa14.03□□□□□ -0.16
CCDC40-208ENST00000572270 FAM212AQ96EL1 285 aa14.03□□□□□ -0.16
CCDC40-208ENST00000572270 BICD1Q96G01 975 aa14.03□□□□□ -0.16
CCDC40-208ENST00000572270 RPF1Q9H9Y2 349 aaKnown RBP14.03□□□□□ -0.16
CCDC40-208ENST00000572270 NFE2L3Q9Y4A8 694 aa14.03□□□□□ -0.16
CCDC40-208ENST00000572270 BCAT2O15382 392 aaPredicted RBP14.02□□□□□ -0.17
CCDC40-208ENST00000572270 SLC28A2O43868 658 aa14.02□□□□□ -0.17
CCDC40-208ENST00000572270 JUPP14923 745 aa14.02□□□□□ -0.17
CCDC40-208ENST00000572270 PFKLP17858 780 aa14.02□□□□□ -0.17
CCDC40-208ENST00000572270 TNFSF9P41273 254 aa14.02□□□□□ -0.17
CCDC40-208ENST00000572270 IL12RB1P42701 662 aa14.02□□□□□ -0.17
CCDC40-208ENST00000572270 WASP42768 502 aa14.02□□□□□ -0.17
CCDC40-208ENST00000572270 GRK6P43250 576 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms