RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 HOXB2P14652 356 aa12.15□□□□□ -0.46
CDH3-208ENST00000569036 TYMPP19971 482 aa12.15□□□□□ -0.46
CDH3-208ENST00000569036 CR2P20023 1033 aa12.15□□□□□ -0.46
CDH3-208ENST00000569036 EIF2DP41214 584 aaKnown RBP12.15□□□□□ -0.46
CDH3-208ENST00000569036 TNFRSF4P43489 277 aa12.15□□□□□ -0.46
CDH3-208ENST00000569036 NLRP5P59047 1200 aa12.15□□□□□ -0.46
CDH3-208ENST00000569036 INF2Q27J81 1249 aa12.15□□□□□ -0.46
CDH3-208ENST00000569036 ZNF568Q3ZCX4 644 aa12.15□□□□□ -0.46
CDH3-208ENST00000569036 HES3Q5TGS1 186 aa12.15□□□□□ -0.46
CDH3-208ENST00000569036 SMC5Q8IY18 1101 aa12.15□□□□□ -0.46
CDH3-208ENST00000569036 ZNF248Q8NDW4 579 aa12.15□□□□□ -0.46
CDH3-208ENST00000569036 MCPH1Q8NEM0 835 aa12.15□□□□□ -0.46
CDH3-208ENST00000569036 PIGOQ8TEQ8 1089 aa12.15□□□□□ -0.46
CDH3-208ENST00000569036 SNRNP27Q8WVK2 155 aaKnown RBP12.15□□□□□ -0.46
CDH3-208ENST00000569036 EIF2AK1Q9BQI3 630 aaKnown RBP12.15□□□□□ -0.46
CDH3-208ENST00000569036 CD248Q9HCU0 757 aa12.15□□□□□ -0.46
CDH3-208ENST00000569036 ARHGEF4Q9NR80 690 aa12.15□□□□□ -0.46
CDH3-208ENST00000569036 TNFSF13BQ9Y275 285 aa12.15□□□□□ -0.46
CDH3-208ENST00000569036 PCDHGA1Q9Y5H4 931 aa12.15□□□□□ -0.46
CDH3-208ENST00000569036 SPTBN1Q01082 2364 aaKnown RBP12.15□□□□□ -0.46
CDH3-208ENST00000569036 STK36Q9NRP7 1315 aa12.14□□□□□ -0.47
CDH3-208ENST00000569036 A0A1B0GVT2 93 aa12.14□□□□□ -0.47
CDH3-208ENST00000569036 BCAT2O15382 392 aaPredicted RBP12.14□□□□□ -0.47
CDH3-208ENST00000569036 IGHDP01880 384 aa12.14□□□□□ -0.47
CDH3-208ENST00000569036 HAPLN1P10915 354 aaPredicted RBP12.14□□□□□ -0.47
CDH3-208ENST00000569036 MYF5P13349 255 aa12.14□□□□□ -0.47
CDH3-208ENST00000569036 TCF3P15923 654 aa12.14□□□□□ -0.47
CDH3-208ENST00000569036 GRIA2P42262 883 aa12.14□□□□□ -0.47
CDH3-208ENST00000569036 NAMPTP43490 491 aa12.14□□□□□ -0.47
CDH3-208ENST00000569036 NUCB1Q02818 461 aa12.14□□□□□ -0.47
CDH3-208ENST00000569036 RESTQ13127 1097 aa12.14□□□□□ -0.47
CDH3-208ENST00000569036 SF3A1Q15459 793 aaKnown RBP12.14□□□□□ -0.47
CDH3-208ENST00000569036 DSTYKQ6XUX3 929 aa12.14□□□□□ -0.47
CDH3-208ENST00000569036 ATG14Q6ZNE5 492 aa12.14□□□□□ -0.47
CDH3-208ENST00000569036 TRMT11Q7Z4G4 463 aaKnown RBP12.14□□□□□ -0.47
CDH3-208ENST00000569036 PHTF2Q8N3S3 785 aa12.14□□□□□ -0.47
CDH3-208ENST00000569036 NACC1Q96RE7 527 aa12.14□□□□□ -0.47
CDH3-208ENST00000569036 HSD17B14Q9BPX1 270 aa12.14□□□□□ -0.47
CDH3-208ENST00000569036 SLC6A17Q9H1V8 727 aa12.14□□□□□ -0.47
CDH3-208ENST00000569036 NAP1L2Q9ULW6 460 aaPredicted RBP12.14□□□□□ -0.47
CDH3-208ENST00000569036 PCDHA4Q9UN74 947 aa12.14□□□□□ -0.47
CDH3-208ENST00000569036 MAGED2Q9UNF1 606 aaPredicted RBP12.14□□□□□ -0.47
CDH3-208ENST00000569036 CCDC196A0A1B0GTZ2 297 aa12.13□□□□□ -0.47
CDH3-208ENST00000569036 BTBD18B2RXH4 712 aa12.13□□□□□ -0.47
CDH3-208ENST00000569036 RFPL3O75679 317 aa12.13□□□□□ -0.47
CDH3-208ENST00000569036 NCAM1P13591 858 aa12.13□□□□□ -0.47
CDH3-208ENST00000569036 WASP42768 502 aa12.13□□□□□ -0.47
CDH3-208ENST00000569036 RIPPLY3P57055 190 aa12.13□□□□□ -0.47
CDH3-208ENST00000569036 PCBP4P57723 403 aaKnown RBP12.13□□□□□ -0.47
CDH3-208ENST00000569036 NFKB2Q00653 900 aa12.13□□□□□ -0.47
CDH3-208ENST00000569036 EXOSC10Q01780 885 aaKnown RBP12.13□□□□□ -0.47
CDH3-208ENST00000569036 AKAP17AQ02040 695 aaKnown RBP12.13□□□□□ -0.47
CDH3-208ENST00000569036 VAC14Q08AM6 782 aa12.13□□□□□ -0.47
CDH3-208ENST00000569036 SKOR2Q2VWA4 1001 aaPredicted RBP12.13□□□□□ -0.47
CDH3-208ENST00000569036 KIAA1614Q5VZ46 1190 aa12.13□□□□□ -0.47
CDH3-208ENST00000569036 CREB3L3Q68CJ9 461 aa12.13□□□□□ -0.47
CDH3-208ENST00000569036 ARL14EPQ8N8R7 260 aaPredicted RBP12.13□□□□□ -0.47
CDH3-208ENST00000569036 TSC1Q92574 1164 aa12.13□□□□□ -0.47
CDH3-208ENST00000569036 ERLEC1Q96DZ1 483 aa12.13□□□□□ -0.47
CDH3-208ENST00000569036 ZCWPW1Q9H0M4 648 aa12.13□□□□□ -0.47
CDH3-208ENST00000569036 PTPRHQ9HD43 1115 aa12.13□□□□□ -0.47
CDH3-208ENST00000569036 SH3GLB2Q9NR46 395 aa12.13□□□□□ -0.47
CDH3-208ENST00000569036 HSPBP1Q9NZL4 362 aa12.13□□□□□ -0.47
CDH3-208ENST00000569036 GCNT4Q9P109 453 aa12.13□□□□□ -0.47
CDH3-208ENST00000569036 TP53BP1Q12888 1972 aaPredicted RBP12.12□□□□□ -0.47
CDH3-208ENST00000569036 LRBAP50851 2863 aa12.12□□□□□ -0.47
CDH3-208ENST00000569036 PCDHGA12O60330 932 aa12.12□□□□□ -0.47
CDH3-208ENST00000569036 AFPP02771 609 aaKnown RBP12.12□□□□□ -0.47
CDH3-208ENST00000569036 ATP2B1P20020 1258 aa12.12□□□□□ -0.47
CDH3-208ENST00000569036 CD6P30203 668 aa12.12□□□□□ -0.47
CDH3-208ENST00000569036 LRPAP1P30533 357 aa12.12□□□□□ -0.47
CDH3-208ENST00000569036 TNFSF9P41273 254 aa12.12□□□□□ -0.47
CDH3-208ENST00000569036 GPR15P49685 360 aa12.12□□□□□ -0.47
CDH3-208ENST00000569036 EFNA5P52803 228 aa12.12□□□□□ -0.47
CDH3-208ENST00000569036 DHCR24Q15392 516 aa12.12□□□□□ -0.47
CDH3-208ENST00000569036 FBXL19Q6PCT2 694 aa12.12□□□□□ -0.47
CDH3-208ENST00000569036 FILIP1Q7Z7B0 1213 aa12.12□□□□□ -0.47
CDH3-208ENST00000569036 MIB1Q86YT6 1006 aa12.12□□□□□ -0.47
CDH3-208ENST00000569036 BLIDQ8IZY5 108 aa12.12□□□□□ -0.47
CDH3-208ENST00000569036 SPPL2BQ8TCT7 592 aa12.12□□□□□ -0.47
CDH3-208ENST00000569036 IPO4Q8TEX9 1081 aaKnown RBP12.12□□□□□ -0.47
CDH3-208ENST00000569036 LRRC15Q8TF66 581 aa12.12□□□□□ -0.47
CDH3-208ENST00000569036 SNX21Q969T3 373 aa12.12□□□□□ -0.47
CDH3-208ENST00000569036 HIC2Q96JB3 615 aa12.12□□□□□ -0.47
CDH3-208ENST00000569036 ZFRQ96KR1 1074 aaKnown RBP12.12□□□□□ -0.47
CDH3-208ENST00000569036 SLC26A6Q9BXS9 759 aa12.12□□□□□ -0.47
CDH3-208ENST00000569036 ABI2Q9NYB9 513 aaPredicted RBP12.12□□□□□ -0.47
CDH3-208ENST00000569036 HCN2Q9UL51 889 aa12.12□□□□□ -0.47
CDH3-208ENST00000569036 ARHGAP26Q9UNA1 814 aa12.12□□□□□ -0.47
CDH3-208ENST00000569036 SNX11Q9Y5W9 270 aa12.12□□□□□ -0.47
CDH3-208ENST00000569036 C2orf78A6NCI8 922 aa12.11□□□□□ -0.47
CDH3-208ENST00000569036 CBX4O00257 560 aa12.11□□□□□ -0.47
CDH3-208ENST00000569036 ENC1O14682 589 aa12.11□□□□□ -0.47
CDH3-208ENST00000569036 ZBTB24O43167 697 aaPredicted RBP12.11□□□□□ -0.47
CDH3-208ENST00000569036 CSH1P0DML2 217 aa12.11□□□□□ -0.47
CDH3-208ENST00000569036 CSH2P0DML3 217 aa12.11□□□□□ -0.47
CDH3-208ENST00000569036 ODC1P11926 461 aa12.11□□□□□ -0.47
CDH3-208ENST00000569036 GCFC2P16383 781 aaKnown RBP12.11□□□□□ -0.47
CDH3-208ENST00000569036 NTSR1P30989 418 aa12.11□□□□□ -0.47
CDH3-208ENST00000569036 CSNK1EP49674 416 aaKnown RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms