RNA–Protein interactions for RNA: ENST00000565511.5

RAB40C-209, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 783 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-209ENST00000565511 VNN1O95497 513 aa25.33■■□□□ 1.65
RAB40C-209ENST00000565511 STAU1O95793 577 aaKnown RBP25.33■■□□□ 1.65
RAB40C-209ENST00000565511 USP17L7P0C7H9 530 aa25.33■■□□□ 1.65
RAB40C-209ENST00000565511 PRR29P0C7W0 189 aa25.33■■□□□ 1.65
RAB40C-209ENST00000565511 PTPN1P18031 435 aaKnown RBP25.33■■□□□ 1.65
RAB40C-209ENST00000565511 GJA4P35212 333 aa25.33■■□□□ 1.65
RAB40C-209ENST00000565511 TNNC1P63316 161 aa25.33■■□□□ 1.65
RAB40C-209ENST00000565511 DLG4P78352 724 aa25.33■■□□□ 1.65
RAB40C-209ENST00000565511 PPP2R5DQ14738 602 aa25.33■■□□□ 1.65
RAB40C-209ENST00000565511 RSPO4Q2I0M5 234 aaPredicted RBP25.33■■□□□ 1.65
RAB40C-209ENST00000565511 EML3Q32P44 896 aa25.33■■□□□ 1.65
RAB40C-209ENST00000565511 PRR23BQ6ZRT6 265 aa25.33■■□□□ 1.65
RAB40C-209ENST00000565511 ERMP1Q7Z2K6 904 aa25.33■■□□□ 1.65
RAB40C-209ENST00000565511 TTLL2Q9BWV7 592 aa25.33■■□□□ 1.65
RAB40C-209ENST00000565511 B3GNT5Q9BYG0 378 aa25.33■■□□□ 1.65
RAB40C-209ENST00000565511 ECT2Q9H8V3 914 aa25.33■■□□□ 1.65
RAB40C-209ENST00000565511 DLL3Q9NYJ7 618 aa25.33■■□□□ 1.65
RAB40C-209ENST00000565511 HPSEQ9Y251 543 aa25.33■■□□□ 1.65
RAB40C-209ENST00000565511 SPAG17Q6Q759 2223 aa25.33■■□□□ 1.65
RAB40C-209ENST00000565511 RALGAPA1Q6GYQ0 2036 aa25.32■■□□□ 1.64
RAB40C-209ENST00000565511 MED19A0JLT2 244 aaPredicted RBP25.32■■□□□ 1.64
RAB40C-209ENST00000565511 PDIA4P13667 645 aaKnown RBP25.32■■□□□ 1.64
RAB40C-209ENST00000565511 PXNP49023 591 aaPredicted RBP25.32■■□□□ 1.64
RAB40C-209ENST00000565511 CDH8P55286 799 aa25.32■■□□□ 1.64
RAB40C-209ENST00000565511 PDGFRLQ15198 375 aa25.32■■□□□ 1.64
RAB40C-209ENST00000565511 MAPRE1Q15691 268 aaKnown RBP25.32■■□□□ 1.64
RAB40C-209ENST00000565511 CC2D1AQ6P1N0 951 aaPredicted RBP25.32■■□□□ 1.64
RAB40C-209ENST00000565511 SCARA5Q6ZMJ2 495 aa25.32■■□□□ 1.64
RAB40C-209ENST00000565511 DENND5BQ6ZUT9 1274 aa25.32■■□□□ 1.64
RAB40C-209ENST00000565511 SYNPOQ8N3V7 929 aa25.32■■□□□ 1.64
RAB40C-209ENST00000565511 PARD3BQ8TEW8 1205 aa25.32■■□□□ 1.64
RAB40C-209ENST00000565511 OSCP1Q8WVF1 389 aa25.32■■□□□ 1.64
RAB40C-209ENST00000565511 LINC00597Q9H2U6 94 aa25.32■■□□□ 1.64
RAB40C-209ENST00000565511 EXOC1Q9NV70 894 aa25.32■■□□□ 1.64
RAB40C-209ENST00000565511 DUS2Q9NX74 493 aaKnown RBP25.32■■□□□ 1.64
RAB40C-209ENST00000565511 CGNQ9P2M7 1197 aaKnown RBP25.32■■□□□ 1.64
RAB40C-209ENST00000565511 MYOFQ9NZM1 2061 aa25.32■■□□□ 1.64
RAB40C-209ENST00000565511 ANTXRLA6NF34 631 aa25.31■■□□□ 1.64
RAB40C-209ENST00000565511 C4BPAP04003 597 aaKnown RBP25.31■■□□□ 1.64
RAB40C-209ENST00000565511 GALK1P51570 392 aa25.31■■□□□ 1.64
RAB40C-209ENST00000565511 TRPC3Q13507 836 aa25.31■■□□□ 1.64
RAB40C-209ENST00000565511 LONP2Q86WA8 852 aa25.31■■□□□ 1.64
RAB40C-209ENST00000565511 B3GALNT2Q8NCR0 500 aa25.31■■□□□ 1.64
RAB40C-209ENST00000565511 C8orf48Q96LL4 319 aa25.31■■□□□ 1.64
RAB40C-209ENST00000565511 ARHGAP26Q9UNA1 814 aa25.31■■□□□ 1.64
RAB40C-209ENST00000565511 A8MXQ7 604 aa25.3■■□□□ 1.64
RAB40C-209ENST00000565511 RNF40O75150 1001 aa25.3■■□□□ 1.64
RAB40C-209ENST00000565511 HDCP19113 662 aa25.3■■□□□ 1.64
RAB40C-209ENST00000565511 CLDN10P78369 228 aa25.3■■□□□ 1.64
RAB40C-209ENST00000565511 SPEM2Q0P670 501 aa25.3■■□□□ 1.64
RAB40C-209ENST00000565511 BIRC3Q13489 604 aa25.3■■□□□ 1.64
RAB40C-209ENST00000565511 SIM2Q14190 667 aaPredicted RBP25.3■■□□□ 1.64
RAB40C-209ENST00000565511 KCNB1Q14721 858 aa25.3■■□□□ 1.64
RAB40C-209ENST00000565511 C1orf220Q5T0J3 134 aa25.3■■□□□ 1.64
RAB40C-209ENST00000565511 RNF38Q9H0F5 515 aa25.3■■□□□ 1.64
RAB40C-209ENST00000565511 GMEB2Q9UKD1 530 aa25.3■■□□□ 1.64
RAB40C-209ENST00000565511 ZNF840PA6NDX5 716 aa25.29■■□□□ 1.64
RAB40C-209ENST00000565511 SCAMP3O14828 347 aaKnown RBP25.29■■□□□ 1.64
RAB40C-209ENST00000565511 TRIM66O15016 1216 aa25.29■■□□□ 1.64
RAB40C-209ENST00000565511 TCF3P15923 654 aa25.29■■□□□ 1.64
RAB40C-209ENST00000565511 CMA1P23946 247 aa25.29■■□□□ 1.64
RAB40C-209ENST00000565511 ANXA13P27216 316 aa25.29■■□□□ 1.64
RAB40C-209ENST00000565511 ATICP31939 592 aa25.29■■□□□ 1.64
RAB40C-209ENST00000565511 IFNAR2P48551 515 aa25.29■■□□□ 1.64
RAB40C-209ENST00000565511 NOP14P78316 857 aaKnown RBP25.29■■□□□ 1.64
RAB40C-209ENST00000565511 FOXK2Q01167 660 aa25.29■■□□□ 1.64
RAB40C-209ENST00000565511 GRSF1Q12849 480 aaKnown RBP eCLIP25.29■■□□□ 1.643e-7■■■■□ 19.7
RAB40C-209ENST00000565511 GAB4Q2WGN9 574 aa25.29■■□□□ 1.64
RAB40C-209ENST00000565511 ZNF699Q32M78 642 aa25.29■■□□□ 1.64
RAB40C-209ENST00000565511 LAIR1Q6GTX8 287 aa25.29■■□□□ 1.64
RAB40C-209ENST00000565511 PAQR9Q6ZVX9 377 aa25.29■■□□□ 1.64
RAB40C-209ENST00000565511 WDR5BQ86VZ2 330 aa25.29■■□□□ 1.64
RAB40C-209ENST00000565511 SLC9A9Q8IVB4 645 aa25.29■■□□□ 1.64
RAB40C-209ENST00000565511 CPA6Q8N4T0 437 aa25.29■■□□□ 1.64
RAB40C-209ENST00000565511 FSIP1Q8NA03 581 aa25.29■■□□□ 1.64
RAB40C-209ENST00000565511 P2RY13Q9BPV8 354 aa25.29■■□□□ 1.64
RAB40C-209ENST00000565511 VRTNQ9H8Y1 702 aa25.29■■□□□ 1.64
RAB40C-209ENST00000565511 HMGXB4Q9UGU5 601 aa25.29■■□□□ 1.64
RAB40C-209ENST00000565511 USP18Q9UMW8 372 aa25.29■■□□□ 1.64
RAB40C-209ENST00000565511 LEFTY2O00292 366 aa25.28■■□□□ 1.64
RAB40C-209ENST00000565511 PHACTR2O75167 634 aa25.28■■□□□ 1.64
RAB40C-209ENST00000565511 NR3C1P04150 777 aa25.28■■□□□ 1.64
RAB40C-209ENST00000565511 FAM163BP0C2L3 166 aa25.28■■□□□ 1.64
RAB40C-209ENST00000565511 HOXA6P31267 233 aa25.28■■□□□ 1.64
RAB40C-209ENST00000565511 NDUFA8P51970 172 aa25.28■■□□□ 1.64
RAB40C-209ENST00000565511 TAF10Q12962 218 aa25.28■■□□□ 1.64
RAB40C-209ENST00000565511 ORC1Q13415 861 aa25.28■■□□□ 1.64
RAB40C-209ENST00000565511 NCOA4Q13772 614 aa25.28■■□□□ 1.64
RAB40C-209ENST00000565511 PUM1Q14671 1186 aaKnown RBP eCLIP25.28■■□□□ 1.64
RAB40C-209ENST00000565511 DGLUCYQ7Z3D6 616 aa25.28■■□□□ 1.64
RAB40C-209ENST00000565511 SYAP1Q96A49 352 aaPredicted RBP25.28■■□□□ 1.64
RAB40C-209ENST00000565511 SPATA32Q96LK8 384 aa25.28■■□□□ 1.64
RAB40C-209ENST00000565511 GOLPH3LQ9H4A5 285 aa25.28■■□□□ 1.64
RAB40C-209ENST00000565511 TRPM5Q9NZQ8 1165 aa25.28■■□□□ 1.64
RAB40C-209ENST00000565511 OLFM2O95897 454 aa25.27■■□□□ 1.64
RAB40C-209ENST00000565511 OAS1P00973 400 aaKnown RBP25.27■■□□□ 1.64
RAB40C-209ENST00000565511 IFRD2Q12894 506 aaPredicted RBP25.27■■□□□ 1.64
RAB40C-209ENST00000565511 FAM35AQ86V20 835 aa25.27■■□□□ 1.64
RAB40C-209ENST00000565511 GOLGA5Q8TBA6 731 aa25.27■■□□□ 1.64
RAB40C-209ENST00000565511 SECISBP2LQ93073 1101 aaKnown RBP25.27■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms