RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 C8orf48Q96LL4 319 aa17.57■□□□□ 0.4
CLN3-208ENST00000561505 DUSP9Q99956 384 aaKnown RBP17.57■□□□□ 0.4
CLN3-208ENST00000561505 TRPC7Q9HCX4 862 aa17.57■□□□□ 0.4
CLN3-208ENST00000561505 PANK4Q9NVE7 773 aa17.57■□□□□ 0.4
CLN3-208ENST00000561505 MMP17Q9ULZ9 603 aa17.57■□□□□ 0.4
CLN3-208ENST00000561505 NME7Q9Y5B8 376 aa17.57■□□□□ 0.4
CLN3-208ENST00000561505 PTPRDP23468 1912 aa17.57■□□□□ 0.4
CLN3-208ENST00000561505 HELZP42694 1942 aaKnown RBP17.57■□□□□ 0.4
CLN3-208ENST00000561505 ZNF840PA6NDX5 716 aa17.56■□□□□ 0.4
CLN3-208ENST00000561505 ZNF233A6NK53 670 aa17.56■□□□□ 0.4
CLN3-208ENST00000561505 PRPF6O94906 941 aaKnown RBP17.56■□□□□ 0.4
CLN3-208ENST00000561505 TXLNAP40222 546 aa17.56■□□□□ 0.4
CLN3-208ENST00000561505 KCNB1Q14721 858 aa17.56■□□□□ 0.4
CLN3-208ENST00000561505 DUOXA2Q1HG44 320 aa17.56■□□□□ 0.4
CLN3-208ENST00000561505 RNF43Q68DV7 783 aa17.56■□□□□ 0.4
CLN3-208ENST00000561505 TCEAL6Q6IPX3 200 aa17.56■□□□□ 0.4
CLN3-208ENST00000561505 EPM2AIP1Q7L775 607 aaPredicted RBP17.56■□□□□ 0.4
CLN3-208ENST00000561505 WDR49Q8IV35 697 aa17.56■□□□□ 0.4
CLN3-208ENST00000561505 SYCP3Q8IZU3 236 aa17.56■□□□□ 0.4
CLN3-208ENST00000561505 TCEAL3Q969E4 200 aa17.56■□□□□ 0.4
CLN3-208ENST00000561505 MYLPFQ96A32 169 aa17.56■□□□□ 0.4
CLN3-208ENST00000561505 RNF38Q9H0F5 515 aa17.56■□□□□ 0.4
CLN3-208ENST00000561505 PCIF1Q9H4Z3 704 aa17.56■□□□□ 0.4
CLN3-208ENST00000561505 KIAA1586Q9HCI6 787 aa17.56■□□□□ 0.4
CLN3-208ENST00000561505 EHD2Q9NZN4 543 aa17.56■□□□□ 0.4
CLN3-208ENST00000561505 FRYQ5TBA9 3013 aa17.55■□□□□ 0.4
CLN3-208ENST00000561505 LNP1A1A4G5 178 aa17.55■□□□□ 0.4
CLN3-208ENST00000561505 LEFTY2O00292 366 aa17.55■□□□□ 0.4
CLN3-208ENST00000561505 STAU1O95793 577 aaKnown RBP17.55■□□□□ 0.4
CLN3-208ENST00000561505 OAS1P00973 400 aaKnown RBP17.55■□□□□ 0.4
CLN3-208ENST00000561505 CYP17A1P05093 508 aa17.55■□□□□ 0.4
CLN3-208ENST00000561505 KRT19P08727 400 aa17.55■□□□□ 0.4
CLN3-208ENST00000561505 IDEP14735 1019 aa17.55■□□□□ 0.4
CLN3-208ENST00000561505 BDNFP23560 247 aa17.55■□□□□ 0.4
CLN3-208ENST00000561505 MRPS21P82921 87 aaKnown RBP17.55■□□□□ 0.4
CLN3-208ENST00000561505 CRY1Q16526 586 aa17.55■□□□□ 0.4
CLN3-208ENST00000561505 HSF5Q4G112 596 aaPredicted RBP17.55■□□□□ 0.4
CLN3-208ENST00000561505 USP39Q53GS9 565 aaKnown RBP17.55■□□□□ 0.4
CLN3-208ENST00000561505 CBWD2Q8IUF1 395 aa17.55■□□□□ 0.4
CLN3-208ENST00000561505 GLIS3Q8NEA6 775 aa17.55■□□□□ 0.4
CLN3-208ENST00000561505 PCED1BQ96HM7 432 aa17.55■□□□□ 0.4
CLN3-208ENST00000561505 KBTBD4Q9NVX7 518 aa17.55■□□□□ 0.4
CLN3-208ENST00000561505 TRPM5Q9NZQ8 1165 aa17.55■□□□□ 0.4
CLN3-208ENST00000561505 ANTXRLA6NF34 631 aa17.54■□□□□ 0.4
CLN3-208ENST00000561505 CDX4O14627 284 aaPredicted RBP17.54■□□□□ 0.4
CLN3-208ENST00000561505 TRIM66O15016 1216 aa17.54■□□□□ 0.4
CLN3-208ENST00000561505 CST3P01034 146 aaPredicted RBP17.54■□□□□ 0.4
CLN3-208ENST00000561505 HNRNPLP14866 589 aaKnown RBP eCLIP17.54■□□□□ 0.4
CLN3-208ENST00000561505 DGKEP52429 567 aa17.54■□□□□ 0.4
CLN3-208ENST00000561505 PSMC1P62191 440 aaKnown RBP17.54■□□□□ 0.4
CLN3-208ENST00000561505 E2F4Q16254 413 aa17.54■□□□□ 0.4
CLN3-208ENST00000561505 LMBRD2Q68DH5 695 aaPredicted RBP17.54■□□□□ 0.4
CLN3-208ENST00000561505 FAM173BQ6P4H8 233 aa17.54■□□□□ 0.4
CLN3-208ENST00000561505 TRAPPC11Q7Z392 1133 aa17.54■□□□□ 0.4
CLN3-208ENST00000561505 CCDC65Q8IXS2 484 aa17.54■□□□□ 0.4
CLN3-208ENST00000561505 TSTD1Q8NFU3 115 aa17.54■□□□□ 0.4
CLN3-208ENST00000561505 ZNF507Q8TCN5 953 aa17.54■□□□□ 0.4
CLN3-208ENST00000561505 CHAMP1Q96JM3 812 aa17.54■□□□□ 0.4
CLN3-208ENST00000561505 EDEM2Q9BV94 578 aa17.54■□□□□ 0.4
CLN3-208ENST00000561505 GZF1Q9H116 711 aaPredicted RBP17.54■□□□□ 0.4
CLN3-208ENST00000561505 TMEM30AQ9NV96 361 aa17.54■□□□□ 0.4
CLN3-208ENST00000561505 IL37Q9NZH6 218 aa17.54■□□□□ 0.4
CLN3-208ENST00000561505 EVLQ9UI08 416 aaPredicted RBP17.54■□□□□ 0.4
CLN3-208ENST00000561505 ABCA7Q8IZY2 2146 aa17.54■□□□□ 0.4
CLN3-208ENST00000561505 VPS37CA5D8V6 355 aaPredicted RBP17.53■□□□□ 0.4
CLN3-208ENST00000561505 SLC9A3R1O14745 358 aaPredicted RBP17.53■□□□□ 0.4
CLN3-208ENST00000561505 EIF3DO15371 548 aaKnown RBP eCLIP17.53■□□□□ 0.4
CLN3-208ENST00000561505 TGFB1I1O43294 461 aa17.53■□□□□ 0.4
CLN3-208ENST00000561505 TNNC2P02585 160 aa17.53■□□□□ 0.4
CLN3-208ENST00000561505 PROS1P07225 676 aa17.53■□□□□ 0.4
CLN3-208ENST00000561505 CSRP1P21291 193 aaKnown RBP17.53■□□□□ 0.4
CLN3-208ENST00000561505 SYT1P21579 422 aa17.53■□□□□ 0.4
CLN3-208ENST00000561505 GRIK1P39086 918 aa17.53■□□□□ 0.4
CLN3-208ENST00000561505 P2RY2P41231 377 aa17.53■□□□□ 0.4
CLN3-208ENST00000561505 STAT6P42226 847 aa17.53■□□□□ 0.4
CLN3-208ENST00000561505 KIR2DL1P43626 348 aaPredicted RBP17.53■□□□□ 0.4
CLN3-208ENST00000561505 NASPP49321 788 aaPredicted RBP17.53■□□□□ 0.4
CLN3-208ENST00000561505 CREB5Q02930 508 aa17.53■□□□□ 0.4
CLN3-208ENST00000561505 EHHADHQ08426 723 aa17.53■□□□□ 0.4
CLN3-208ENST00000561505 MESP2Q0VG99 397 aa17.53■□□□□ 0.4
CLN3-208ENST00000561505 DHCR24Q15392 516 aa17.53■□□□□ 0.4
CLN3-208ENST00000561505 SPDYCQ5MJ68 293 aa17.53■□□□□ 0.4
CLN3-208ENST00000561505 SNX30Q5VWJ9 437 aa17.53■□□□□ 0.4
CLN3-208ENST00000561505 RHBDF2Q6PJF5 856 aa17.53■□□□□ 0.4
CLN3-208ENST00000561505 TMEM92Q6UXU6 159 aa17.53■□□□□ 0.4
CLN3-208ENST00000561505 PHTF2Q8N3S3 785 aa17.53■□□□□ 0.4
CLN3-208ENST00000561505 MDGA1Q8NFP4 955 aa17.53■□□□□ 0.4
CLN3-208ENST00000561505 USP28Q96RU2 1077 aa17.53■□□□□ 0.4
CLN3-208ENST00000561505 TMEM121BQ9BXQ6 578 aaPredicted RBP17.53■□□□□ 0.4
CLN3-208ENST00000561505 TNMDQ9H2S6 317 aa17.53■□□□□ 0.4
CLN3-208ENST00000561505 HSPBP1Q9NZL4 362 aa17.53■□□□□ 0.4
CLN3-208ENST00000561505 NUP205Q92621 2012 aa17.52■□□□□ 0.4
CLN3-208ENST00000561505 C4orf47A7E2U8 309 aa17.52■□□□□ 0.4
CLN3-208ENST00000561505 F8VP50 259 aa17.52■□□□□ 0.4
CLN3-208ENST00000561505 PDGFRBP09619 1106 aa17.52■□□□□ 0.4
CLN3-208ENST00000561505 BCKDHBP21953 392 aa17.52■□□□□ 0.4
CLN3-208ENST00000561505 SNRPFP62306 86 aaKnown RBP17.52■□□□□ 0.4
CLN3-208ENST00000561505 STXBP4Q6ZWJ1 553 aa17.52■□□□□ 0.4
CLN3-208ENST00000561505 FILIP1Q7Z7B0 1213 aa17.52■□□□□ 0.4
CLN3-208ENST00000561505 IL17RCQ8NAC3 791 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms