RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 ANHXE9PGG2 379 aa14.39□□□□□ -0.11
SHMT2-228ENST00000557302 DCXO43602 365 aa14.39□□□□□ -0.11
SHMT2-228ENST00000557302 CAVIN2O95810 425 aa14.39□□□□□ -0.11
SHMT2-228ENST00000557302 PAEPP09466 180 aa14.39□□□□□ -0.11
SHMT2-228ENST00000557302 ATXN8OSP0DMR3 200 aa14.39□□□□□ -0.11
SHMT2-228ENST00000557302 VDRP11473 427 aa14.39□□□□□ -0.11
SHMT2-228ENST00000557302 KRT5P13647 590 aa14.39□□□□□ -0.11
SHMT2-228ENST00000557302 ALADP13716 330 aa14.39□□□□□ -0.11
SHMT2-228ENST00000557302 NPR3P17342 541 aa14.39□□□□□ -0.11
SHMT2-228ENST00000557302 COPB1P53618 953 aaKnown RBP14.39□□□□□ -0.11
SHMT2-228ENST00000557302 MAP3K7CLP57077 242 aa14.39□□□□□ -0.11
SHMT2-228ENST00000557302 CYP4F8P98187 520 aa14.39□□□□□ -0.11
SHMT2-228ENST00000557302 APBA1Q02410 837 aa14.39□□□□□ -0.11
SHMT2-228ENST00000557302 HTR4Q13639 388 aa14.39□□□□□ -0.11
SHMT2-228ENST00000557302 PTPN21Q16825 1174 aa14.39□□□□□ -0.11
SHMT2-228ENST00000557302 GPR158Q5T848 1215 aa14.39□□□□□ -0.11
SHMT2-228ENST00000557302 ARHGAP17Q68EM7 881 aa14.39□□□□□ -0.11
SHMT2-228ENST00000557302 GJB7Q6PEY0 223 aa14.39□□□□□ -0.11
SHMT2-228ENST00000557302 CLEC20AQ6ZU45 233 aa14.39□□□□□ -0.11
SHMT2-228ENST00000557302 NUP93Q8N1F7 819 aa14.39□□□□□ -0.11
SHMT2-228ENST00000557302 RBBP8NLQ8NC74 664 aaPredicted RBP14.39□□□□□ -0.11
SHMT2-228ENST00000557302 MRPS31Q92665 395 aaKnown RBP14.39□□□□□ -0.11
SHMT2-228ENST00000557302 TTLL2Q9BWV7 592 aa14.39□□□□□ -0.11
SHMT2-228ENST00000557302 DUSP16Q9BY84 665 aa14.39□□□□□ -0.11
SHMT2-228ENST00000557302 HSD3B7Q9H2F3 369 aa14.39□□□□□ -0.11
SHMT2-228ENST00000557302 CSNK1G1Q9HCP0 422 aa14.39□□□□□ -0.11
SHMT2-228ENST00000557302 SIX2Q9NPC8 291 aa14.39□□□□□ -0.11
SHMT2-228ENST00000557302 ZMYM5Q9UJ78 669 aa14.39□□□□□ -0.11
SHMT2-228ENST00000557302 SORCS3Q9UPU3 1222 aa14.39□□□□□ -0.11
SHMT2-228ENST00000557302 BEST1O76090 585 aa14.38□□□□□ -0.11
SHMT2-228ENST00000557302 RTN3O95197 1032 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-228ENST00000557302 F11P03951 625 aa14.38□□□□□ -0.11
SHMT2-228ENST00000557302 ATP1A3P13637 1013 aa14.38□□□□□ -0.11
SHMT2-228ENST00000557302 DDX6P26196 483 aaKnown RBP eCLIP14.38□□□□□ -0.11
SHMT2-228ENST00000557302 ZNF132P52740 706 aa14.38□□□□□ -0.11
SHMT2-228ENST00000557302 SLC5A3P53794 718 aa14.38□□□□□ -0.11
SHMT2-228ENST00000557302 SLC8A3P57103 927 aa14.38□□□□□ -0.11
SHMT2-228ENST00000557302 USP46P62068 366 aa14.38□□□□□ -0.11
SHMT2-228ENST00000557302 IFRD2Q12894 506 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-228ENST00000557302 IQCB1Q15051 598 aa14.38□□□□□ -0.11
SHMT2-228ENST00000557302 ARHGAP44Q17R89 818 aa14.38□□□□□ -0.11
SHMT2-228ENST00000557302 FAM78AQ5JUQ0 283 aa14.38□□□□□ -0.11
SHMT2-228ENST00000557302 STXBP5Q5T5C0 1151 aa14.38□□□□□ -0.11
SHMT2-228ENST00000557302 POTEHQ6S545 545 aa14.38□□□□□ -0.11
SHMT2-228ENST00000557302 PARM1Q6UWI2 310 aa14.38□□□□□ -0.11
SHMT2-228ENST00000557302 TMEM150AQ86TG1 271 aa14.38□□□□□ -0.11
SHMT2-228ENST00000557302 ZMIZ2Q8NF64 920 aa14.38□□□□□ -0.11
SHMT2-228ENST00000557302 ST13P5Q8NFI4 369 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-228ENST00000557302 ZSCAN18Q8TBC5 510 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-228ENST00000557302 RSAD2Q8WXG1 361 aa14.38□□□□□ -0.11
SHMT2-228ENST00000557302 FGF14Q92915 247 aa14.38□□□□□ -0.11
SHMT2-228ENST00000557302 SMARCD2Q92925 531 aa14.38□□□□□ -0.11
SHMT2-228ENST00000557302 KHSRPQ92945 711 aaKnown RBP eCLIP14.38□□□□□ -0.11
SHMT2-228ENST00000557302 ZSWIM3Q96MP5 696 aa14.38□□□□□ -0.11
SHMT2-228ENST00000557302 ASB16Q96NS5 453 aa14.38□□□□□ -0.11
SHMT2-228ENST00000557302 LSM14BQ9BX40 385 aaKnown RBP14.38□□□□□ -0.11
SHMT2-228ENST00000557302 TASP1Q9H6P5 420 aa14.38□□□□□ -0.11
SHMT2-228ENST00000557302 CBX8Q9HC52 389 aa14.38□□□□□ -0.11
SHMT2-228ENST00000557302 HESX1Q9UBX0 185 aa14.38□□□□□ -0.11
SHMT2-228ENST00000557302 DNAJC12Q9UKB3 198 aa14.38□□□□□ -0.11
SHMT2-228ENST00000557302 CNTN6Q9UQ52 1028 aa14.38□□□□□ -0.11
SHMT2-228ENST00000557302 NUMBLQ9Y6R0 609 aa14.38□□□□□ -0.11
SHMT2-228ENST00000557302 LRRC10BA6NIK2 292 aa14.37□□□□□ -0.11
SHMT2-228ENST00000557302 LGALS16A8MUM7 142 aa14.37□□□□□ -0.11
SHMT2-228ENST00000557302 RNF225M0QZC1 329 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-228ENST00000557302 TNFRSF10BO14763 440 aa14.37□□□□□ -0.11
SHMT2-228ENST00000557302 TADA3O75528 432 aa14.37□□□□□ -0.11
SHMT2-228ENST00000557302 YWHAQP27348 245 aa14.37□□□□□ -0.11
SHMT2-228ENST00000557302 TPM4P67936 248 aa14.37□□□□□ -0.11
SHMT2-228ENST00000557302 KCNMA1Q12791 1236 aa14.37□□□□□ -0.11
SHMT2-228ENST00000557302 TDGQ13569 410 aa14.37□□□□□ -0.11
SHMT2-228ENST00000557302 GOLGA7BQ2TAP0 167 aa14.37□□□□□ -0.11
SHMT2-228ENST00000557302 KLHDC7AQ5VTJ3 777 aa14.37□□□□□ -0.11
SHMT2-228ENST00000557302 ANKRD52Q8NB46 1076 aa14.37□□□□□ -0.11
SHMT2-228ENST00000557302 SCAMP5Q8TAC9 235 aa14.37□□□□□ -0.11
SHMT2-228ENST00000557302 SHC3Q92529 594 aa14.37□□□□□ -0.11
SHMT2-228ENST00000557302 SLITRK1Q96PX8 696 aa14.37□□□□□ -0.11
SHMT2-228ENST00000557302 KXD1Q9BQD3 176 aa14.37□□□□□ -0.11
SHMT2-228ENST00000557302 PNPLA8Q9NP80 782 aa14.37□□□□□ -0.11
SHMT2-228ENST00000557302 COMMD8Q9NX08 183 aa14.37□□□□□ -0.11
SHMT2-228ENST00000557302 TRPM5Q9NZQ8 1165 aa14.37□□□□□ -0.11
SHMT2-228ENST00000557302 TSPAN16Q9UKR8 245 aa14.37□□□□□ -0.11
SHMT2-228ENST00000557302 SOBPA7XYQ1 873 aa14.36□□□□□ -0.11
SHMT2-228ENST00000557302 PI4K2BG5E9Z4 385 aa14.36□□□□□ -0.11
SHMT2-228ENST00000557302 O00370 1275 aa14.36□□□□□ -0.11
SHMT2-228ENST00000557302 ECI2O75521 394 aa14.36□□□□□ -0.11
SHMT2-228ENST00000557302 RFX1P22670 979 aa14.36□□□□□ -0.11
SHMT2-228ENST00000557302 BRD2P25440 801 aaKnown RBP14.36□□□□□ -0.11
SHMT2-228ENST00000557302 USP8P40818 1118 aa14.36□□□□□ -0.11
SHMT2-228ENST00000557302 PPP3CCP48454 512 aa14.36□□□□□ -0.11
SHMT2-228ENST00000557302 BCAT1P54687 386 aa14.36□□□□□ -0.11
SHMT2-228ENST00000557302 UBXN1Q04323 297 aa14.36□□□□□ -0.11
SHMT2-228ENST00000557302 TAF10Q12962 218 aa14.36□□□□□ -0.11
SHMT2-228ENST00000557302 STILQ15468 1287 aa14.36□□□□□ -0.11
SHMT2-228ENST00000557302 TXNDC8Q6A555 127 aa14.36□□□□□ -0.11
SHMT2-228ENST00000557302 SMYD5Q6GMV2 418 aa14.36□□□□□ -0.11
SHMT2-228ENST00000557302 TANGO2Q6ICL3 276 aa14.36□□□□□ -0.11
SHMT2-228ENST00000557302 DPY19L2P1Q6NXN4 242 aa14.36□□□□□ -0.11
SHMT2-228ENST00000557302 LCLAT1Q6UWP7 414 aa14.36□□□□□ -0.11
SHMT2-228ENST00000557302 APTXQ7Z2E3 356 aaKnown RBP14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms