RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 SHC3Q92529 594 aa18.53■□□□□ 0.56
SHMT2-225ENST00000556798 SPATA17Q96L03 361 aa18.53■□□□□ 0.56
SHMT2-225ENST00000556798 NAP1L5Q96NT1 182 aaPredicted RBP18.53■□□□□ 0.56
SHMT2-225ENST00000556798 UHRF1Q96T88 793 aaPredicted RBP18.53■□□□□ 0.56
SHMT2-225ENST00000556798 ZSWIM1Q9BR11 485 aa18.53■□□□□ 0.56
SHMT2-225ENST00000556798 GANQ9H2C0 597 aa18.53■□□□□ 0.56
SHMT2-225ENST00000556798 IL21Q9HBE4 155 aa18.53■□□□□ 0.56
SHMT2-225ENST00000556798 ACP6Q9NPH0 428 aa18.53■□□□□ 0.56
SHMT2-225ENST00000556798 RTN4Q9NQC3 1192 aaKnown RBP18.53■□□□□ 0.56
SHMT2-225ENST00000556798 AVENQ9NQS1 362 aaPredicted RBP18.53■□□□□ 0.56
SHMT2-225ENST00000556798 TSPAN16Q9UKR8 245 aa18.53■□□□□ 0.56
SHMT2-225ENST00000556798 CNTN6Q9UQ52 1028 aa18.53■□□□□ 0.56
SHMT2-225ENST00000556798 NR2E1Q9Y466 385 aa18.53■□□□□ 0.56
SHMT2-225ENST00000556798 NCOR1O75376 2440 aa18.52■□□□□ 0.56
SHMT2-225ENST00000556798 LOC730098B7Z3J9 87 aa18.52■□□□□ 0.56
SHMT2-225ENST00000556798 MOSPD3O75425 235 aa18.52■□□□□ 0.56
SHMT2-225ENST00000556798 VDRP11473 427 aa18.52■□□□□ 0.56
SHMT2-225ENST00000556798 SSTR3P32745 418 aaPredicted RBP18.52■□□□□ 0.56
SHMT2-225ENST00000556798 FANCCQ00597 558 aa18.52■□□□□ 0.56
SHMT2-225ENST00000556798 TEAD2Q15562 447 aa18.52■□□□□ 0.56
SHMT2-225ENST00000556798 FILIP1LQ4L180 1135 aa18.52■□□□□ 0.56
SHMT2-225ENST00000556798 DENND5BQ6ZUT9 1274 aa18.52■□□□□ 0.56
SHMT2-225ENST00000556798 GAREM2Q75VX8 874 aa18.52■□□□□ 0.56
SHMT2-225ENST00000556798 OTOP3Q7RTS5 596 aa18.52■□□□□ 0.56
SHMT2-225ENST00000556798 NPAS3Q8IXF0 933 aa18.52■□□□□ 0.56
SHMT2-225ENST00000556798 LEMD2Q8NC56 503 aa18.52■□□□□ 0.56
SHMT2-225ENST00000556798 ST13P5Q8NFI4 369 aaPredicted RBP18.52■□□□□ 0.56
SHMT2-225ENST00000556798 FGF13Q92913 245 aa18.52■□□□□ 0.56
SHMT2-225ENST00000556798 ERGIC2Q96RQ1 377 aa18.52■□□□□ 0.56
SHMT2-225ENST00000556798 NAA15Q9BXJ9 866 aaKnown RBP18.52■□□□□ 0.56
SHMT2-225ENST00000556798 GPR88Q9GZN0 384 aa18.52■□□□□ 0.56
SHMT2-225ENST00000556798 CD320Q9NPF0 282 aa18.52■□□□□ 0.56
SHMT2-225ENST00000556798 PLCB1Q9NQ66 1216 aa18.52■□□□□ 0.56
SHMT2-225ENST00000556798 USTQ9Y2C2 406 aa18.52■□□□□ 0.56
SHMT2-225ENST00000556798 HELZP42694 1942 aaKnown RBP18.52■□□□□ 0.56
SHMT2-225ENST00000556798 A0A0C4DFX4 3053 aa18.52■□□□□ 0.55
SHMT2-225ENST00000556798 A0A1B0GTH6 734 aa18.51■□□□□ 0.55
SHMT2-225ENST00000556798 C19orf67A6NJJ6 358 aa18.51■□□□□ 0.55
SHMT2-225ENST00000556798 O00370 1275 aa18.51■□□□□ 0.55
SHMT2-225ENST00000556798 ZNF197O14709 1029 aa18.51■□□□□ 0.55
SHMT2-225ENST00000556798 NPR3P17342 541 aa18.51■□□□□ 0.55
SHMT2-225ENST00000556798 POLR2FP61218 127 aaKnown RBP18.51■□□□□ 0.55
SHMT2-225ENST00000556798 CYP4F8P98187 520 aa18.51■□□□□ 0.55
SHMT2-225ENST00000556798 DRAP1Q14919 205 aaPredicted RBP18.51■□□□□ 0.55
SHMT2-225ENST00000556798 STXBP5Q5T5C0 1151 aa18.51■□□□□ 0.55
SHMT2-225ENST00000556798 POTEHQ6S545 545 aa18.51■□□□□ 0.55
SHMT2-225ENST00000556798 TTC30AQ86WT1 665 aa18.51■□□□□ 0.55
SHMT2-225ENST00000556798 ACSF2Q96CM8 615 aaPredicted RBP18.51■□□□□ 0.55
SHMT2-225ENST00000556798 MCRS1Q96EZ8 462 aa18.51■□□□□ 0.55
SHMT2-225ENST00000556798 DUSP16Q9BY84 665 aa18.51■□□□□ 0.55
SHMT2-225ENST00000556798 ATXN3LQ9H3M9 355 aa18.51■□□□□ 0.55
SHMT2-225ENST00000556798 CSNK1G1Q9HCP0 422 aa18.51■□□□□ 0.55
SHMT2-225ENST00000556798 NLRC4Q9NPP4 1024 aa18.51■□□□□ 0.55
SHMT2-225ENST00000556798 CDH7Q9ULB5 785 aa18.51■□□□□ 0.55
SHMT2-225ENST00000556798 FOXN3O00409 490 aaPredicted RBP18.5■□□□□ 0.55
SHMT2-225ENST00000556798 CYP26A1O43174 497 aa18.5■□□□□ 0.55
SHMT2-225ENST00000556798 TADA3O75528 432 aa18.5■□□□□ 0.55
SHMT2-225ENST00000556798 RFX1P22670 979 aa18.5■□□□□ 0.55
SHMT2-225ENST00000556798 GNA15P30679 374 aa18.5■□□□□ 0.55
SHMT2-225ENST00000556798 SLC5A3P53794 718 aa18.5■□□□□ 0.55
SHMT2-225ENST00000556798 GPRIN1Q7Z2K8 1008 aa18.5■□□□□ 0.55
SHMT2-225ENST00000556798 TMEM150AQ86TG1 271 aa18.5■□□□□ 0.55
SHMT2-225ENST00000556798 GPIHBP1Q8IV16 184 aa18.5■□□□□ 0.55
SHMT2-225ENST00000556798 NEK11Q8NG66 645 aa18.5■□□□□ 0.55
SHMT2-225ENST00000556798 SCAMP5Q8TAC9 235 aa18.5■□□□□ 0.55
SHMT2-225ENST00000556798 UBA3Q8TBC4 463 aa18.5■□□□□ 0.55
SHMT2-225ENST00000556798 TRMT2BQ96GJ1 504 aaKnown RBP18.5■□□□□ 0.55
SHMT2-225ENST00000556798 MYRFLQ96LU7 910 aa18.5■□□□□ 0.55
SHMT2-225ENST00000556798 GCNAQ96QF7 691 aa18.5■□□□□ 0.55
SHMT2-225ENST00000556798 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.5■□□□□ 0.55
SHMT2-225ENST00000556798 KIAA1257Q9ULG3 409 aa18.5■□□□□ 0.55
SHMT2-225ENST00000556798 HHLA1C9JL84 531 aa18.49■□□□□ 0.55
SHMT2-225ENST00000556798 M0QYV0 167 aa18.49■□□□□ 0.55
SHMT2-225ENST00000556798 TULP2O00295 520 aa18.49■□□□□ 0.55
SHMT2-225ENST00000556798 TNFRSF10BO14763 440 aa18.49■□□□□ 0.55
SHMT2-225ENST00000556798 MICAL2O94851 1124 aa18.49■□□□□ 0.55
SHMT2-225ENST00000556798 F11P03951 625 aa18.49■□□□□ 0.55
SHMT2-225ENST00000556798 LAMP2P13473 410 aa18.49■□□□□ 0.55
SHMT2-225ENST00000556798 CDC25CP30307 473 aa18.49■□□□□ 0.55
SHMT2-225ENST00000556798 NR1I3Q14994 352 aa18.49■□□□□ 0.55
SHMT2-225ENST00000556798 GJD3Q8N144 294 aa18.49■□□□□ 0.55
SHMT2-225ENST00000556798 NUP93Q8N1F7 819 aa18.49■□□□□ 0.55
SHMT2-225ENST00000556798 ANKRD52Q8NB46 1076 aa18.49■□□□□ 0.55
SHMT2-225ENST00000556798 CEP295NLQ96MC4 621 aa18.49■□□□□ 0.55
SHMT2-225ENST00000556798 SLITRK6Q9H5Y7 841 aa18.49■□□□□ 0.55
SHMT2-225ENST00000556798 UXTQ9UBK9 157 aaPredicted RBP18.49■□□□□ 0.55
SHMT2-225ENST00000556798 HESX1Q9UBX0 185 aa18.49■□□□□ 0.55
SHMT2-225ENST00000556798 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.49■□□□□ 0.55
SHMT2-225ENST00000556798 TTC28Q96AY4 2481 aa18.49■□□□□ 0.55
SHMT2-225ENST00000556798 F8VZ95 297 aa18.48■□□□□ 0.55
SHMT2-225ENST00000556798 THAP12O43422 761 aa18.48■□□□□ 0.55
SHMT2-225ENST00000556798 FGF19O95750 216 aa18.48■□□□□ 0.55
SHMT2-225ENST00000556798 CLCN1P35523 988 aa18.48■□□□□ 0.55
SHMT2-225ENST00000556798 BCAT1P54687 386 aa18.48■□□□□ 0.55
SHMT2-225ENST00000556798 UBASH3AP57075 661 aa18.48■□□□□ 0.55
SHMT2-225ENST00000556798 PDE4CQ08493 712 aa18.48■□□□□ 0.55
SHMT2-225ENST00000556798 GPR158Q5T848 1215 aa18.48■□□□□ 0.55
SHMT2-225ENST00000556798 LCLAT1Q6UWP7 414 aa18.48■□□□□ 0.55
SHMT2-225ENST00000556798 FAM71AQ8IYT1 594 aa18.48■□□□□ 0.55
SHMT2-225ENST00000556798 ZDHHC14Q8IZN3 488 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 238.5 ms