RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 GPR88Q9GZN0 384 aa10.84□□□□□ -0.67
SCFD1-220ENST00000556486 HAPLN2Q9GZV7 340 aa10.84□□□□□ -0.67
SCFD1-220ENST00000556486 EBF3Q9H4W6 596 aa10.84□□□□□ -0.67
SCFD1-220ENST00000556486 FBRSL1Q9HCM7 1045 aaKnown RBP10.84□□□□□ -0.67
SCFD1-220ENST00000556486 TUBGCP4Q9UGJ1 667 aa10.84□□□□□ -0.67
SCFD1-220ENST00000556486 PCDHGA5Q9Y5G8 931 aa10.84□□□□□ -0.67
SCFD1-220ENST00000556486 THADAQ6YHU6 1953 aa10.84□□□□□ -0.67
SCFD1-220ENST00000556486 KIAA1549LQ6ZVL6 1849 aa10.84□□□□□ -0.67
SCFD1-220ENST00000556486 OR6C75A6NL08 312 aa10.83□□□□□ -0.68
SCFD1-220ENST00000556486 LILRA1O75019 489 aa10.83□□□□□ -0.68
SCFD1-220ENST00000556486 PLA2G4BP0C869 781 aa10.83□□□□□ -0.68
SCFD1-220ENST00000556486 GABRR2P28476 465 aa10.83□□□□□ -0.68
SCFD1-220ENST00000556486 HOXA6P31267 233 aa10.83□□□□□ -0.68
SCFD1-220ENST00000556486 EPHB3P54753 998 aa10.83□□□□□ -0.68
SCFD1-220ENST00000556486 YWHAHQ04917 246 aaPredicted RBP10.83□□□□□ -0.68
SCFD1-220ENST00000556486 RABEP1Q15276 862 aa10.83□□□□□ -0.68
SCFD1-220ENST00000556486 ENOX2Q16206 610 aaKnown RBP10.83□□□□□ -0.68
SCFD1-220ENST00000556486 ITPRIPL2Q3MIP1 535 aa10.83□□□□□ -0.68
SCFD1-220ENST00000556486 C8orf34Q49A92 452 aa10.83□□□□□ -0.68
SCFD1-220ENST00000556486 ARHGAP29Q52LW3 1261 aa10.83□□□□□ -0.68
SCFD1-220ENST00000556486 ARSHQ5FYA8 562 aa10.83□□□□□ -0.68
SCFD1-220ENST00000556486 DAB2IPQ5VWQ8 1189 aa10.83□□□□□ -0.68
SCFD1-220ENST00000556486 C1orf228Q6PIY5 440 aa10.83□□□□□ -0.68
SCFD1-220ENST00000556486 HAUS6Q7Z4H7 955 aa10.83□□□□□ -0.68
SCFD1-220ENST00000556486 ATCAYQ86WG3 371 aa10.83□□□□□ -0.68
SCFD1-220ENST00000556486 ABCA7Q8IZY2 2146 aa10.83□□□□□ -0.68
SCFD1-220ENST00000556486 ATAD1Q8NBU5 361 aa10.83□□□□□ -0.68
SCFD1-220ENST00000556486 E2F7Q96AV8 911 aa10.83□□□□□ -0.68
SCFD1-220ENST00000556486 LPIN3Q9BQK8 851 aa10.83□□□□□ -0.68
SCFD1-220ENST00000556486 TGIF2Q9GZN2 237 aa10.83□□□□□ -0.68
SCFD1-220ENST00000556486 ANKFY1Q9P2R3 1169 aa10.83□□□□□ -0.68
SCFD1-220ENST00000556486 HSFX1Q9UBD0 423 aa10.83□□□□□ -0.68
SCFD1-220ENST00000556486 UBQLN1Q9UMX0 589 aaKnown RBP10.83□□□□□ -0.68
SCFD1-220ENST00000556486 ADAMTS20P59510 1910 aa10.83□□□□□ -0.68
SCFD1-220ENST00000556486 ADAMTS9Q9P2N4 1935 aa10.83□□□□□ -0.68
SCFD1-220ENST00000556486 ZNF638Q14966 1978 aaKnown RBP10.83□□□□□ -0.68
SCFD1-220ENST00000556486 SPAARA0A1B0GVQ0 90 aa10.82□□□□□ -0.68
SCFD1-220ENST00000556486 BCLAF3A2AJT9 711 aaKnown RBP10.82□□□□□ -0.68
SCFD1-220ENST00000556486 ANTXRLA6NF34 631 aa10.82□□□□□ -0.68
SCFD1-220ENST00000556486 XPOTO43592 962 aaKnown RBP10.82□□□□□ -0.68
SCFD1-220ENST00000556486 CXCL8P10145 99 aa10.82□□□□□ -0.68
SCFD1-220ENST00000556486 ARSAP15289 507 aa10.82□□□□□ -0.68
SCFD1-220ENST00000556486 TYMPP19971 482 aa10.82□□□□□ -0.68
SCFD1-220ENST00000556486 MARCKSP29966 332 aaPredicted RBP10.82□□□□□ -0.68
SCFD1-220ENST00000556486 ABCD1P33897 745 aa10.82□□□□□ -0.68
SCFD1-220ENST00000556486 GUCY2FP51841 1108 aa10.82□□□□□ -0.68
SCFD1-220ENST00000556486 POU5F1Q01860 360 aaKnown RBP10.82□□□□□ -0.68
SCFD1-220ENST00000556486 GPR17Q13304 367 aa10.82□□□□□ -0.68
SCFD1-220ENST00000556486 PLD1Q13393 1074 aa10.82□□□□□ -0.68
SCFD1-220ENST00000556486 MYBPC2Q14324 1141 aa10.82□□□□□ -0.68
SCFD1-220ENST00000556486 ELF2Q15723 593 aa10.82□□□□□ -0.68
SCFD1-220ENST00000556486 ALG1LQ6GMV1 187 aa10.82□□□□□ -0.68
SCFD1-220ENST00000556486 CD302Q8IX05 232 aa10.82□□□□□ -0.68
SCFD1-220ENST00000556486 SYNPOQ8N3V7 929 aa10.82□□□□□ -0.68
SCFD1-220ENST00000556486 EHBP1Q8NDI1 1231 aa10.82□□□□□ -0.68
SCFD1-220ENST00000556486 STKLD1Q8NE28 680 aa10.82□□□□□ -0.68
SCFD1-220ENST00000556486 RPLP0P6Q8NHW5 317 aa10.82□□□□□ -0.68
SCFD1-220ENST00000556486 BPIFB1Q8TDL5 484 aa10.82□□□□□ -0.68
SCFD1-220ENST00000556486 ZC3H10Q96K80 434 aaKnown RBP10.82□□□□□ -0.68
SCFD1-220ENST00000556486 TMEM9BQ9NQ34 198 aa10.82□□□□□ -0.68
SCFD1-220ENST00000556486 HPS4Q9NQG7 708 aa10.82□□□□□ -0.68
SCFD1-220ENST00000556486 GKN1Q9NS71 199 aa10.82□□□□□ -0.68
SCFD1-220ENST00000556486 CCL26Q9Y258 94 aa10.82□□□□□ -0.68
SCFD1-220ENST00000556486 MYH11P35749 1972 aa10.82□□□□□ -0.68
SCFD1-220ENST00000556486 SMG1Q96Q15 3661 aaKnown RBP10.81□□□□□ -0.68
SCFD1-220ENST00000556486 A0A0B4J269 797 aa10.81□□□□□ -0.68
SCFD1-220ENST00000556486 VWA3AA6NCI4 1184 aa10.81□□□□□ -0.68
SCFD1-220ENST00000556486 TAF4O00268 1085 aa10.81□□□□□ -0.68
SCFD1-220ENST00000556486 CDX4O14627 284 aaPredicted RBP10.81□□□□□ -0.68
SCFD1-220ENST00000556486 OGTO15294 1046 aa10.81□□□□□ -0.68
SCFD1-220ENST00000556486 BCKDHBP21953 392 aa10.81□□□□□ -0.68
SCFD1-220ENST00000556486 NMT1P30419 496 aaKnown RBP10.81□□□□□ -0.68
SCFD1-220ENST00000556486 ALDH1A3P47895 512 aa10.81□□□□□ -0.68
SCFD1-220ENST00000556486 RPIAP49247 311 aa10.81□□□□□ -0.68
SCFD1-220ENST00000556486 DGKEP52429 567 aa10.81□□□□□ -0.68
SCFD1-220ENST00000556486 IRX4P78413 519 aa10.81□□□□□ -0.68
SCFD1-220ENST00000556486 PPP2R3AQ06190 1150 aa10.81□□□□□ -0.68
SCFD1-220ENST00000556486 GRSF1Q12849 480 aaKnown RBP eCLIP10.81□□□□□ -0.68
SCFD1-220ENST00000556486 TMEM196Q5HYL7 178 aa10.81□□□□□ -0.68
SCFD1-220ENST00000556486 SPATA1Q5VX52 437 aa10.81□□□□□ -0.68
SCFD1-220ENST00000556486 ARMCX6Q7L4S7 300 aa10.81□□□□□ -0.68
SCFD1-220ENST00000556486 DNAJB7Q7Z6W7 309 aaPredicted RBP10.81□□□□□ -0.68
SCFD1-220ENST00000556486 TTC30AQ86WT1 665 aa10.81□□□□□ -0.68
SCFD1-220ENST00000556486 FIZ1Q96SL8 496 aa10.81□□□□□ -0.68
SCFD1-220ENST00000556486 SEPT5Q99719 369 aaPredicted RBP10.81□□□□□ -0.68
SCFD1-220ENST00000556486 REEP2Q9BRK0 252 aa10.81□□□□□ -0.68
SCFD1-220ENST00000556486 ST6GALNAC4Q9H4F1 302 aa10.81□□□□□ -0.68
SCFD1-220ENST00000556486 CCSER2Q9H7U1 834 aa10.81□□□□□ -0.68
SCFD1-220ENST00000556486 FSCN3Q9NQT6 498 aa10.81□□□□□ -0.68
SCFD1-220ENST00000556486 RAB6BQ9NRW1 208 aa10.81□□□□□ -0.68
SCFD1-220ENST00000556486 TBX20Q9UMR3 447 aa10.81□□□□□ -0.68
SCFD1-220ENST00000556486 DERAQ9Y315 318 aa10.81□□□□□ -0.68
SCFD1-220ENST00000556486 ASB3Q9Y575 518 aa10.81□□□□□ -0.68
SCFD1-220ENST00000556486 IGSF10Q6WRI0 2623 aa10.81□□□□□ -0.68
SCFD1-220ENST00000556486 ATXN2Q99700 1313 aaKnown RBP10.81□□□□□ -0.68
SCFD1-220ENST00000556486 OBSL1O75147 1896 aa10.81□□□□□ -0.68
SCFD1-220ENST00000556486 TSC2P49815 1807 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 ANO9A1A5B4 782 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 MTMR11A4FU01 709 aa10.8□□□□□ -0.68
SCFD1-220ENST00000556486 TMEM8BA6NDV4 472 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms