RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 PAFAH2Q99487 392 aa15.51■□□□□ 0.07
CUX1-215ENST00000556210 LRRC19Q9H756 370 aa15.51■□□□□ 0.07
CUX1-215ENST00000556210 DPP3Q9NY33 737 aa15.51■□□□□ 0.07
CUX1-215ENST00000556210 SNTG2Q9NY99 539 aa15.51■□□□□ 0.07
CUX1-215ENST00000556210 ZC3H11AO75152 810 aaKnown RBP eCLIP15.51■□□□□ 0.073e-6■■■■□ 25.7
CUX1-215ENST00000556210 PRAMEF19Q5SWL8 479 aa15.51■□□□□ 0.07
CUX1-215ENST00000556210 FAM172AQ8WUF8 416 aa15.51■□□□□ 0.07
CUX1-215ENST00000556210 ARHGAP28Q9P2N2 729 aa15.51■□□□□ 0.07
CUX1-215ENST00000556210 A0A0B4J269 797 aa15.51■□□□□ 0.07
CUX1-215ENST00000556210 CCDC160A6NGH7 325 aa15.51■□□□□ 0.07
CUX1-215ENST00000556210 VNN1O95497 513 aa15.51■□□□□ 0.07
CUX1-215ENST00000556210 ABCG1P45844 678 aa15.51■□□□□ 0.07
CUX1-215ENST00000556210 EPHB1P54762 984 aa15.51■□□□□ 0.07
CUX1-215ENST00000556210 VCPP55072 806 aaKnown RBP15.51■□□□□ 0.07
CUX1-215ENST00000556210 SNX16P57768 344 aa15.51■□□□□ 0.07
CUX1-215ENST00000556210 TGFB2P61812 414 aa15.51■□□□□ 0.07
CUX1-215ENST00000556210 RBP5P82980 135 aa15.51■□□□□ 0.07
CUX1-215ENST00000556210 LRRC36Q1X8D7 754 aa15.51■□□□□ 0.07
CUX1-215ENST00000556210 TMEM63BQ5T3F8 832 aa15.51■□□□□ 0.07
CUX1-215ENST00000556210 SH3PXD2AQ5TCZ1 1133 aa15.51■□□□□ 0.07
CUX1-215ENST00000556210 B3GNT5Q9BYG0 378 aa15.51■□□□□ 0.07
CUX1-215ENST00000556210 APOL1O14791 398 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 HBP1O60381 514 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 HUS1O60921 280 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 MOCS2O96007 188 aaPredicted RBP15.5■□□□□ 0.07
CUX1-215ENST00000556210 GAD2Q05329 585 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 C1QBPQ07021 282 aaKnown RBP15.5■□□□□ 0.07
CUX1-215ENST00000556210 NFIL3Q16649 462 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 PTPN20Q4JDL3 420 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 WDR49Q8IV35 697 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 OR6J1Q8NGC5 347 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 UNKQ9C0B0 810 aaKnown RBP15.5■□□□□ 0.07
CUX1-215ENST00000556210 RNPEPQ9H4A4 650 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 CIB2O75838 187 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 RGS20O76081 388 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 SRGAP2BP0DMP2 458 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 CYP2B6P20813 491 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 GPD1P21695 349 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 ALDH18A1P54886 795 aaKnown RBP15.5■□□□□ 0.07
CUX1-215ENST00000556210 NUDCD3Q8IVD9 361 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 CENPTQ96BT3 561 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 OPTNQ96CV9 577 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 GBP5Q96PP8 586 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 SLITRK1Q96PX8 696 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 CPXM1Q96SM3 734 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 LPIN3Q9BQK8 851 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 MAP3K20Q9NYL2 800 aaKnown RBP15.5■□□□□ 0.07
CUX1-215ENST00000556210 H0YGN5 161 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 ENO1P06733 434 aaKnown RBP15.5■□□□□ 0.07
CUX1-215ENST00000556210 PYGBP11216 843 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 ATXN3P54252 364 aaPredicted RBP15.5■□□□□ 0.07
CUX1-215ENST00000556210 ZNF200P98182 395 aaPredicted RBP15.5■□□□□ 0.07
CUX1-215ENST00000556210 LONP2Q86WA8 852 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 UNC45BQ8IWX7 931 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 TMEM176AQ96HP8 235 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 NFS1Q9Y697 457 aa15.5■□□□□ 0.07
CUX1-215ENST00000556210 DNALI1O14645 258 aaPredicted RBP15.49■□□□□ 0.07
CUX1-215ENST00000556210 DCTN3O75935 186 aa15.49■□□□□ 0.07
CUX1-215ENST00000556210 MICAL2O94851 1124 aa15.49■□□□□ 0.07
CUX1-215ENST00000556210 LYPLA2O95372 231 aa15.49■□□□□ 0.07
CUX1-215ENST00000556210 MMP13P45452 471 aa15.49■□□□□ 0.07
CUX1-215ENST00000556210 RNASELQ05823 741 aaKnown RBP15.49■□□□□ 0.07
CUX1-215ENST00000556210 LACTB2Q53H82 288 aaPredicted RBP15.49■□□□□ 0.07
CUX1-215ENST00000556210 MAP1SQ66K74 1059 aaPredicted RBP15.49■□□□□ 0.07
CUX1-215ENST00000556210 DSTYKQ6XUX3 929 aa15.49■□□□□ 0.07
CUX1-215ENST00000556210 SYDE1Q6ZW31 735 aaPredicted RBP15.49■□□□□ 0.07
CUX1-215ENST00000556210 MTDHQ86UE4 582 aaKnown RBP15.49■□□□□ 0.07
CUX1-215ENST00000556210 PPIL6Q8IXY8 311 aa15.49■□□□□ 0.07
CUX1-215ENST00000556210 MCUQ8NE86 351 aa15.49■□□□□ 0.07
CUX1-215ENST00000556210 PPP4R1Q8TF05 950 aa15.49■□□□□ 0.07
CUX1-215ENST00000556210 PGBD4Q96DM1 585 aa15.49■□□□□ 0.07
CUX1-215ENST00000556210 DDX27Q96GQ7 796 aaKnown RBP15.49■□□□□ 0.07
CUX1-215ENST00000556210 TTC1Q99614 292 aa15.49■□□□□ 0.07
CUX1-215ENST00000556210 UBP1Q9NZI7 540 aa15.49■□□□□ 0.07
CUX1-215ENST00000556210 H3BRB1 525 aa15.49■□□□□ 0.07
CUX1-215ENST00000556210 M0QZ92 97 aa15.49■□□□□ 0.07
CUX1-215ENST00000556210 FARP2O94887 1054 aaPredicted RBP15.49■□□□□ 0.07
CUX1-215ENST00000556210 KLHL38Q2WGJ6 581 aa15.49■□□□□ 0.07
CUX1-215ENST00000556210 ZC3H12AQ5D1E8 599 aaKnown RBP15.49■□□□□ 0.07
CUX1-215ENST00000556210 ZC3H3Q8IXZ2 948 aaKnown RBP15.49■□□□□ 0.07
CUX1-215ENST00000556210 NDUFAF2Q8N183 169 aa15.49■□□□□ 0.07
CUX1-215ENST00000556210 TCP10LQ8TDR4 215 aa15.49■□□□□ 0.07
CUX1-215ENST00000556210 TSSK1BQ9BXA7 367 aa15.49■□□□□ 0.07
CUX1-215ENST00000556210 TUT1Q9H6E5 874 aaKnown RBP15.49■□□□□ 0.07
CUX1-215ENST00000556210 MYPNQ86TC9 1320 aa15.49■□□□□ 0.07
CUX1-215ENST00000556210 HAUS5O94927 633 aa15.49■□□□□ 0.07
CUX1-215ENST00000556210 GEMIN4P57678 1058 aaKnown RBP15.49■□□□□ 0.07
CUX1-215ENST00000556210 IRX1P78414 480 aaPredicted RBP15.49■□□□□ 0.07
CUX1-215ENST00000556210 RASIP1Q5U651 963 aa15.49■□□□□ 0.07
CUX1-215ENST00000556210 ARID3BQ8IVW6 561 aaPredicted RBP15.49■□□□□ 0.07
CUX1-215ENST00000556210 NDRG1Q92597 394 aaKnown RBP15.49■□□□□ 0.07
CUX1-215ENST00000556210 CDT1Q9H211 546 aa15.49■□□□□ 0.07
CUX1-215ENST00000556210 ARMCX1Q9P291 453 aa15.49■□□□□ 0.07
CUX1-215ENST00000556210 ANKRD36CQ5JPF3 1778 aa15.49■□□□□ 0.07
CUX1-215ENST00000556210 LOC100653049A0A140TA62 436 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 A8MUI8 341 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 CFLARO15519 480 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 LIASO43766 372 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 USP12O75317 370 aa15.48■□□□□ 0.07
CUX1-215ENST00000556210 KRT34O76011 436 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms