RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 NR1H3Q13133 447 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 PTK6Q13882 451 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 ZNF394Q53GI3 561 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 SLC45A4Q5BKX6 768 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 METTL7BQ6UX53 244 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 MOB2Q70IA6 237 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 CDR2LQ86X02 465 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-207ENST00000553837 WDTC1Q8N5D0 677 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 NR1H4Q96RI1 486 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-207ENST00000553837 GPR20Q99678 358 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 CCDC28BQ9BUN5 200 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 ELP3Q9H9T3 547 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 ASIC3Q9UHC3 531 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 TBK1Q9UHD2 729 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 TMCO1Q9UM00 188 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 MGAMO43451 1857 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 PI4K2BG5E9Z4 385 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 MAP3K7O43318 606 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 DDNO94850 711 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-207ENST00000553837 CBX6O95503 412 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 DESP17661 470 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 MMP8P22894 467 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 TBXAS1P24557 533 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-207ENST00000553837 ITGA8P53708 1063 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 WDR4P57081 412 aaKnown RBP12.83□□□□□ -0.36
SHMT2-207ENST00000553837 OGDHQ02218 1023 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 AP1B1Q10567 949 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 DNAJC3Q13217 504 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 SPARCL1Q14515 664 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 STAT4Q14765 748 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 RCN1Q15293 331 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 Q3C1V9 767 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 TAF1BQ53T94 588 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-207ENST00000553837 LIN9Q5TKA1 542 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 RASIP1Q5U651 963 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 FAM160B1Q5W0V3 765 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 TXNRD3NBQ6F5E7 133 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 ZPBP2Q6X784 338 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 TRIM72Q6ZMU5 477 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 LRRC74BQ6ZQY2 392 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 SYDE1Q6ZW31 735 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-207ENST00000553837 RNF149Q8NC42 400 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 TFAP2BQ92481 460 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 COPS5Q92905 334 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 SNF8Q96H20 258 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 UBN1Q9NPG3 1134 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 ZFP69BQ9UJL9 534 aa12.83□□□□□ -0.36
SHMT2-207ENST00000553837 TCRBV5S1A1TA0A578 114 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 RASA4BC9J798 803 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 B4GALT5O43286 388 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 RASA4O43374 803 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 PSTPIP1O43586 416 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 CCDC22O60826 627 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 EDF1O60869 148 aaKnown RBP12.82□□□□□ -0.36
SHMT2-207ENST00000553837 ATP6V1G1O75348 118 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 TOM1L1O75674 476 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 ZWINTO95229 277 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 ASMTLO95671 621 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 WEE2P0C1S8 567 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 SERPINB4P48594 390 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 SLC18A1P54219 525 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 SH3BGRP55822 239 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-207ENST00000553837 C1QBPQ07021 282 aaKnown RBP12.82□□□□□ -0.36
SHMT2-207ENST00000553837 WDR49Q8IV35 697 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 RHOT1Q8IXI2 618 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 KATNAL2Q8IYT4 538 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 RIBC1Q8N443 379 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-207ENST00000553837 FEZF2Q8TBJ5 459 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 C17orf50Q8WW18 174 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 OTUD5Q96G74 571 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 VCPIP1Q96JH7 1222 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 NDNQ99608 321 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 TCHPQ9BT92 498 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 OSBPL8Q9BZF1 889 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 ASCC2Q9H1I8 757 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-207ENST00000553837 SYNCQ9H7C4 482 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 SPON1Q9HCB6 807 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 ATXN10Q9UBB4 475 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 SUN2Q9UH99 717 aa12.82□□□□□ -0.36
SHMT2-207ENST00000553837 CPSF3Q9UKF6 684 aaKnown RBP12.82□□□□□ -0.36
SHMT2-207ENST00000553837 IGKV6-21A0A0C4DH24 114 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 TMEM191CA6NGB0 347 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 PRKCBP05771 671 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 HOXC6P09630 235 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 TMEM191BP0C7N4 346 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 KRT10P13645 584 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 ADCY1Q08828 1119 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 PABPC1LQ4VXU2 614 aaKnown RBP12.81□□□□□ -0.36
SHMT2-207ENST00000553837 EEF1DP3Q658K8 133 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 TMEM192Q8IY95 271 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 GLIS1Q8NBF1 620 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 C10orf82Q8WW14 230 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 NRG4Q8WWG1 115 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 NCSTNQ92542 709 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 AZIN2Q96A70 460 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 ACSF2Q96CM8 615 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-207ENST00000553837 PLVAPQ9BX97 442 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 MRPL4Q9BYD3 311 aaKnown RBP12.81□□□□□ -0.36
SHMT2-207ENST00000553837 UBE2OQ9C0C9 1292 aaKnown RBP12.81□□□□□ -0.36
SHMT2-207ENST00000553837 CISHQ9NSE2 258 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms