RNA–Protein interactions for RNA: ENST00000553686.5

ATXN3-223, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 869 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-223ENST00000553686 CHURC1Q8WUH1 139 aa6.86□□□□□ -1.31
ATXN3-223ENST00000553686 POF1BQ8WVV4 589 aa6.86□□□□□ -1.31
ATXN3-223ENST00000553686 NINJ1Q92982 152 aa6.86□□□□□ -1.31
ATXN3-223ENST00000553686 NUP88Q99567 741 aaPredicted RBP6.86□□□□□ -1.31
ATXN3-223ENST00000553686 S1PR5Q9H228 398 aa6.86□□□□□ -1.31
ATXN3-223ENST00000553686 PIH1D3Q9NQM4 214 aaKnown RBP6.86□□□□□ -1.31
ATXN3-223ENST00000553686 ACSS2Q9NR19 701 aa6.86□□□□□ -1.31
ATXN3-223ENST00000553686 SMPD4Q9NXE4 827 aa6.86□□□□□ -1.31
ATXN3-223ENST00000553686 CYP39A1Q9NYL5 469 aa6.86□□□□□ -1.31
ATXN3-223ENST00000553686 NYAP2Q9P242 653 aa6.86□□□□□ -1.31
ATXN3-223ENST00000553686 ADGRA3Q8IWK6 1321 aa6.85□□□□□ -1.31
ATXN3-223ENST00000553686 CDC45O75419 566 aa6.85□□□□□ -1.31
ATXN3-223ENST00000553686 CNOT4O95628 575 aaKnown RBP6.85□□□□□ -1.31
ATXN3-223ENST00000553686 NDUFB10O96000 172 aa6.85□□□□□ -1.31
ATXN3-223ENST00000553686 SP9P0CG40 484 aa6.85□□□□□ -1.31
ATXN3-223ENST00000553686 ALAS1P13196 640 aa6.85□□□□□ -1.31
ATXN3-223ENST00000553686 SP100P23497 879 aaPredicted RBP6.85□□□□□ -1.31
ATXN3-223ENST00000553686 THPOP40225 353 aa6.85□□□□□ -1.31
ATXN3-223ENST00000553686 DGKDQ16760 1214 aa6.85□□□□□ -1.31
ATXN3-223ENST00000553686 KANK2Q63ZY3 851 aa6.85□□□□□ -1.31
ATXN3-223ENST00000553686 CNNM4Q6P4Q7 775 aa6.85□□□□□ -1.31
ATXN3-223ENST00000553686 TMEM184AQ6ZMB5 413 aa6.85□□□□□ -1.31
ATXN3-223ENST00000553686 RTN4RL1Q86UN2 441 aaPredicted RBP6.85□□□□□ -1.31
ATXN3-223ENST00000553686 DHX37Q8IY37 1157 aaKnown RBP6.85□□□□□ -1.31
ATXN3-223ENST00000553686 FOXRED1Q96CU9 486 aaPredicted RBP6.85□□□□□ -1.31
ATXN3-223ENST00000553686 DYNLL2Q96FJ2 89 aa6.85□□□□□ -1.31
ATXN3-223ENST00000553686 SCYL1Q96KG9 808 aa6.85□□□□□ -1.31
ATXN3-223ENST00000553686 RIOK1Q9BRS2 568 aaKnown RBP6.85□□□□□ -1.31
ATXN3-223ENST00000553686 PCIF1Q9H4Z3 704 aa6.85□□□□□ -1.31
ATXN3-223ENST00000553686 HDAC6Q9UBN7 1215 aa6.85□□□□□ -1.31
ATXN3-223ENST00000553686 USP18Q9UMW8 372 aa6.85□□□□□ -1.31
ATXN3-223ENST00000553686 GBF1Q92538 1859 aa6.85□□□□□ -1.31
ATXN3-223ENST00000553686 ZFYVE26Q68DK2 2539 aa6.85□□□□□ -1.31
ATXN3-223ENST00000553686 A0A0G2JNJ9 132 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 C2CD4DB7Z1M9 353 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 PER2O15055 1255 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 GPR42O15529 346 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 CAND2O75155 1236 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 CYP17A1P05093 508 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 ITGB1P05556 798 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 MMP3P08254 477 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 LINC00271P0C7V0 271 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 TECP42680 631 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 ETV4P43268 484 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 RRADP55042 308 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 SHC2P98077 582 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 UBE3AQ05086 875 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 ITIH3Q06033 890 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 NOLC1Q14978 699 aaKnown RBP eCLIP6.84□□□□□ -1.31
ATXN3-223ENST00000553686 EIF4HQ15056 248 aaKnown RBP6.84□□□□□ -1.31
ATXN3-223ENST00000553686 ANKRD54Q6NXT1 300 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 LARP4Q71RC2 724 aaKnown RBP eCLIP6.84□□□□□ -1.31
ATXN3-223ENST00000553686 NOP9Q86U38 636 aaKnown RBP6.84□□□□□ -1.31
ATXN3-223ENST00000553686 FAM160B2Q86V87 743 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 LRRTM3Q86VH5 581 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 CIR1Q86X95 450 aaPredicted RBP6.84□□□□□ -1.31
ATXN3-223ENST00000553686 C1orf210Q8IVY1 113 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 KIAA1958Q8N8K9 716 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 AFG1LQ8WV93 481 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 ATRIPQ8WXE1 791 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 RIN2Q8WYP3 895 aaPredicted RBP6.84□□□□□ -1.31
ATXN3-223ENST00000553686 E2F7Q96AV8 911 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 SEC61A2Q9H9S3 476 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 ATP8A2Q9NTI2 1148 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 CLIP2Q9UDT6 1046 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 Q9UFV3 132 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 SYNPO2Q9UMS6 1093 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 ZKSCAN5Q9Y2L8 839 aa6.84□□□□□ -1.31
ATXN3-223ENST00000553686 DDX49Q9Y6V7 483 aaKnown RBP6.84□□□□□ -1.31
ATXN3-223ENST00000553686 MAST4O15021 2626 aa6.83□□□□□ -1.32
ATXN3-223ENST00000553686 OTOGLQ3ZCN5 2332 aa6.83□□□□□ -1.32
ATXN3-223ENST00000553686 SLC30A4O14863 429 aa6.83□□□□□ -1.32
ATXN3-223ENST00000553686 GH1P01241 217 aa6.83□□□□□ -1.32
ATXN3-223ENST00000553686 CYP2D6P10635 497 aa6.83□□□□□ -1.32
ATXN3-223ENST00000553686 SLC9A1P19634 815 aa6.83□□□□□ -1.32
ATXN3-223ENST00000553686 DNAJB1P25685 340 aa6.83□□□□□ -1.32
ATXN3-223ENST00000553686 APEX1P27695 318 aaKnown RBP6.83□□□□□ -1.32
ATXN3-223ENST00000553686 MTHFRP42898 656 aa6.83□□□□□ -1.32
ATXN3-223ENST00000553686 FNTBP49356 437 aa6.83□□□□□ -1.32
ATXN3-223ENST00000553686 ALDH5A1P51649 535 aaPredicted RBP6.83□□□□□ -1.32
ATXN3-223ENST00000553686 NFKB2Q00653 900 aa6.83□□□□□ -1.32
ATXN3-223ENST00000553686 ALDH6A1Q02252 535 aaKnown RBP6.83□□□□□ -1.32
ATXN3-223ENST00000553686 IKQ13123 557 aaPredicted RBP6.83□□□□□ -1.32
ATXN3-223ENST00000553686 TDGQ13569 410 aa6.83□□□□□ -1.32
ATXN3-223ENST00000553686 DUSP6Q16828 381 aa6.83□□□□□ -1.32
ATXN3-223ENST00000553686 ZNF568Q3ZCX4 644 aa6.83□□□□□ -1.32
ATXN3-223ENST00000553686 ZMAT1Q5H9K5 638 aa6.83□□□□□ -1.32
ATXN3-223ENST00000553686 C12orf60Q5U649 245 aa6.83□□□□□ -1.32
ATXN3-223ENST00000553686 GRAMD4Q6IC98 578 aa6.83□□□□□ -1.32
ATXN3-223ENST00000553686 SERINC5Q86VE9 423 aa6.83□□□□□ -1.32
ATXN3-223ENST00000553686 KIF18BQ86Y91 864 aa6.83□□□□□ -1.32
ATXN3-223ENST00000553686 TDRD5Q8NAT2 981 aaKnown RBP6.83□□□□□ -1.32
ATXN3-223ENST00000553686 KAT2BQ92831 832 aa6.83□□□□□ -1.32
ATXN3-223ENST00000553686 C8orf49Q96NF6 230 aa6.83□□□□□ -1.32
ATXN3-223ENST00000553686 LRRC37BQ96QE4 947 aa6.83□□□□□ -1.32
ATXN3-223ENST00000553686 LMF1Q96S06 567 aa6.83□□□□□ -1.32
ATXN3-223ENST00000553686 KRTAP4-9Q9BYQ8 210 aa6.83□□□□□ -1.32
ATXN3-223ENST00000553686 ERVK-5Q9HDB9 667 aa6.83□□□□□ -1.32
ATXN3-223ENST00000553686 ST6GALNAC2Q9UJ37 374 aa6.83□□□□□ -1.32
ATXN3-223ENST00000553686 ISY1Q9ULR0 285 aaKnown RBP6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms