RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 C3orf70A6NLC5 250 aaPredicted RBP27.67■■■□□ 2.02
CCDC88C-205ENST00000553403 ZNF623O75123 536 aa27.67■■■□□ 2.02
CCDC88C-205ENST00000553403 PDGFRBP09619 1106 aa27.67■■■□□ 2.02
CCDC88C-205ENST00000553403 RGS7P49802 495 aa27.67■■■□□ 2.02
CCDC88C-205ENST00000553403 LMNB2Q03252 620 aa27.67■■■□□ 2.02
CCDC88C-205ENST00000553403 PDE4CQ08493 712 aa27.67■■■□□ 2.02
CCDC88C-205ENST00000553403 GLIPR1L2Q4G1C9 344 aa27.67■■■□□ 2.02
CCDC88C-205ENST00000553403 GSTCDQ8NEC7 633 aa27.67■■■□□ 2.02
CCDC88C-205ENST00000553403 FBXO25Q8TCJ0 367 aa27.67■■■□□ 2.02
CCDC88C-205ENST00000553403 CD99L2Q8TCZ2 262 aa27.67■■■□□ 2.02
CCDC88C-205ENST00000553403 THP07101 528 aa27.66■■■□□ 2.02
CCDC88C-205ENST00000553403 KRT10P13645 584 aa27.66■■■□□ 2.02
CCDC88C-205ENST00000553403 LMO2P25791 158 aa27.66■■■□□ 2.02
CCDC88C-205ENST00000553403 IL1R2P27930 398 aa27.66■■■□□ 2.02
CCDC88C-205ENST00000553403 RPL34P49207 117 aaKnown RBP27.66■■■□□ 2.02
CCDC88C-205ENST00000553403 SLC6A3Q01959 620 aa27.66■■■□□ 2.02
CCDC88C-205ENST00000553403 ITGA7Q13683 1181 aa27.66■■■□□ 2.02
CCDC88C-205ENST00000553403 TAZQ16635 292 aa27.66■■■□□ 2.02
CCDC88C-205ENST00000553403 OLFML1Q6UWY5 402 aa27.66■■■□□ 2.02
CCDC88C-205ENST00000553403 PXYLP1Q8TE99 480 aa27.66■■■□□ 2.02
CCDC88C-205ENST00000553403 RXFP2Q8WXD0 754 aa27.66■■■□□ 2.02
CCDC88C-205ENST00000553403 TSPYL2Q9H2G4 693 aaPredicted RBP27.66■■■□□ 2.02
CCDC88C-205ENST00000553403 ZWILCHQ9H900 591 aa27.66■■■□□ 2.02
CCDC88C-205ENST00000553403 PADI3Q9ULW8 664 aa27.66■■■□□ 2.02
CCDC88C-205ENST00000553403 NEU2Q9Y3R4 380 aa27.66■■■□□ 2.02
CCDC88C-205ENST00000553403 TULP2O00295 520 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 CYB561D2O14569 222 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 TRUB2O95900 331 aaKnown RBP27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 PDGFRAP16234 1089 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 ITIH2P19823 946 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 MIPP30301 263 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 SCNN1AP37088 669 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 MLH1P40692 756 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 CALCOCO2Q13137 446 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 DSC3Q14574 896 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 ZNF618Q5T7W0 954 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 KAZNQ674X7 775 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 CCDC114Q96M63 670 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 GAD1Q99259 594 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 PSD3Q9NYI0 1048 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 SQORQ9Y6N5 450 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 MEIS3P2A8K0S8 358 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 H0YGN5 161 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 HCRTO43612 131 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 LIASO43766 372 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 GNRH1P01148 92 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 KDELR1P24390 212 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 ACADSBP45954 432 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 PKN2Q16513 984 aaKnown RBP27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 TRIM71Q2Q1W2 868 aaKnown RBP27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 OSTM1Q86WC4 334 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 CMASQ8NFW8 434 aaPredicted RBP27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 UBLCP1Q8WVY7 318 aaPredicted RBP27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 PKNOX2Q96KN3 472 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 NCAPGQ9BPX3 1015 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 FRMD8P1Q9BZ68 369 aaPredicted RBP27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 ASIC3Q9UHC3 531 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 USP18Q9UMW8 372 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 NFS1Q9Y697 457 aa27.65■■■□□ 2.02
CCDC88C-205ENST00000553403 CAND2O75155 1236 aa27.64■■■□□ 2.02
CCDC88C-205ENST00000553403 CCDC130P13994 396 aa27.64■■■□□ 2.02
CCDC88C-205ENST00000553403 CD52P31358 61 aa27.64■■■□□ 2.02
CCDC88C-205ENST00000553403 ACLYP53396 1101 aa27.64■■■□□ 2.02
CCDC88C-205ENST00000553403 GYS2P54840 703 aa27.64■■■□□ 2.02
CCDC88C-205ENST00000553403 ADCY2Q08462 1091 aa27.64■■■□□ 2.02
CCDC88C-205ENST00000553403 AGMOQ6ZNB7 445 aa27.64■■■□□ 2.02
CCDC88C-205ENST00000553403 SNF8Q96H20 258 aa27.64■■■□□ 2.02
CCDC88C-205ENST00000553403 HSFY1Q96LI6 401 aa27.64■■■□□ 2.02
CCDC88C-205ENST00000553403 LPIN3Q9BQK8 851 aa27.64■■■□□ 2.02
CCDC88C-205ENST00000553403 FAM204AQ9H8W3 233 aa27.64■■■□□ 2.02
CCDC88C-205ENST00000553403 DRG1Q9Y295 367 aaKnown RBP27.64■■■□□ 2.02
CCDC88C-205ENST00000553403 GOLGA6CA6NDK9 693 aa27.63■■■□□ 2.01
CCDC88C-205ENST00000553403 PIK3R2O00459 728 aa27.63■■■□□ 2.01
CCDC88C-205ENST00000553403 GABRDO14764 452 aa27.63■■■□□ 2.01
CCDC88C-205ENST00000553403 GOLGA6DP0CG33 693 aa27.63■■■□□ 2.01
CCDC88C-205ENST00000553403 RPL9P32969 192 aaKnown RBP27.63■■■□□ 2.01
CCDC88C-205ENST00000553403 CAV1Q03135 178 aa27.63■■■□□ 2.01
CCDC88C-205ENST00000553403 LPIN1Q14693 890 aa27.63■■■□□ 2.01
CCDC88C-205ENST00000553403 TRNP1Q6NT89 227 aa27.63■■■□□ 2.01
CCDC88C-205ENST00000553403 B3GALNT2Q8NCR0 500 aa27.63■■■□□ 2.01
CCDC88C-205ENST00000553403 RAET1EQ8TD07 263 aa27.63■■■□□ 2.01
CCDC88C-205ENST00000553403 ACSF2Q96CM8 615 aaPredicted RBP27.63■■■□□ 2.01
CCDC88C-205ENST00000553403 HNRNPABQ99729 332 aaKnown RBP27.63■■■□□ 2.01
CCDC88C-205ENST00000553403 GOLGA6AQ9NYA3 693 aa27.63■■■□□ 2.01
CCDC88C-205ENST00000553403 NOD1Q9Y239 953 aa27.63■■■□□ 2.01
CCDC88C-205ENST00000553403 ARL5CA6NH57 179 aa27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 MOXD2PA6NHM9 499 aa27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 PAPSS1O43252 624 aaPredicted RBP27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 GABBR2O75899 941 aa27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 GHRP10912 638 aa27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 IVDP26440 423 aa27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 ADORA2BP29275 332 aa27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 ARCQ7LC44 396 aa27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 CCDC89Q8N998 374 aa27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 BBOF1Q8ND07 529 aa27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 KHSRPQ92945 711 aaKnown RBP eCLIP27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 LPPQ93052 612 aa27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 PIWIL1Q96J94 861 aaKnown RBP27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 MIOSQ9NXC5 875 aa27.62■■■□□ 2.01
CCDC88C-205ENST00000553403 ATP8A1Q9Y2Q0 1164 aa27.62■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms