RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 AQP5P55064 265 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 IRX4P78413 519 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 MAP3K10Q02779 954 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 DGKZQ13574 1117 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 BMPR2Q13873 1038 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 KRT72Q14CN4 511 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 TAF5Q15542 800 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 SEPT7Q16181 437 aaKnown RBP5.07□□□□□ -1.6
LIMA1-214ENST00000552783 CRY2Q49AN0 593 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 PRAMEF18Q5VWM3 479 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 KRT39Q6A163 491 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 RASSF3Q86WH2 238 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 PDSS2Q86YH6 399 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 APLFQ8IW19 511 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-214ENST00000552783 CDAN1Q8IWY9 1227 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 KLHL23Q8NBE8 558 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 FBXL13Q8NEE6 735 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 OR6Y1Q8NGX8 325 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 ZNF398Q8TD17 642 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 MTBPQ96DY7 904 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 NT5C1BQ96P26 610 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 IWS1Q96ST2 819 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 SLC13A1Q9BZW2 595 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 ACSS3Q9H6R3 686 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 APOBEC3GQ9HC16 384 aaKnown RBP5.07□□□□□ -1.6
LIMA1-214ENST00000552783 NDE1Q9NXR1 346 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 UBAP1Q9NZ09 502 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 TJP2Q9UDY2 1190 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 SLC24A2Q9UI40 661 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 ZNRF3Q9ULT6 936 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 AK5Q9Y6K8 562 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 SIPA1L1O43166 1804 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 TCRBV9S1A1TA0A576 114 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 LYPLA1O75608 230 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-214ENST00000552783 KRT1P04264 644 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 NSFP46459 744 aaKnown RBP5.07□□□□□ -1.6
LIMA1-214ENST00000552783 EPHB1P54762 984 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 NOMO3P69849 1222 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 CCNIQ14094 377 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 MORF4L2Q15014 288 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 SMAD1Q15797 465 aaKnown RBP5.07□□□□□ -1.6
LIMA1-214ENST00000552783 GSTA3Q16772 222 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 STRIP1Q5VSL9 837 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 ARHGEF16Q5VV41 709 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 CCDC62Q6P9F0 684 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 DENND5BQ6ZUT9 1274 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 CENPUQ71F23 418 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 UNC45BQ8IWX7 931 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 TMEM130Q8N3G9 435 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 ARFGAP1Q8N6T3 406 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 NAT8LQ8N9F0 302 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 EXD1Q8NHP7 514 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 RIN3Q8TB24 985 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 ZNF668Q96K58 619 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-214ENST00000552783 CEP170P1Q96L14 293 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 ZNF778Q96MU6 729 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 ZDHHC15Q96MV8 337 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 ACCSQ96QU6 501 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 CCDC106Q9BWC9 280 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 RANBP17Q9H2T7 1088 aaKnown RBP5.07□□□□□ -1.6
LIMA1-214ENST00000552783 MMADHCQ9H3L0 296 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-214ENST00000552783 XPNPEP1Q9NQW7 623 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 COL20A1Q9P218 1284 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 ATXN10Q9UBB4 475 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 STRIP2Q9ULQ0 834 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 MTO1Q9Y2Z2 717 aaKnown RBP5.07□□□□□ -1.6
LIMA1-214ENST00000552783 COQ4Q9Y3A0 265 aa5.07□□□□□ -1.6
LIMA1-214ENST00000552783 COL14A1Q05707 1796 aaKnown RBP5.07□□□□□ -1.6
LIMA1-214ENST00000552783 NFIBO00712 420 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 P4HA2O15460 535 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 MAGEC1O60732 1142 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 C1QAP02745 245 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 TFAP2AP05549 437 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 ITGA2BP08514 1039 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 PABPC4LP0CB38 370 aaKnown RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 VCLP18206 1134 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 FUT4P22083 530 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 IL1R2P27930 398 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 RPL22P35268 128 aaKnown RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 MSX2P35548 267 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 ELK3P41970 407 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 VCPP55072 806 aaKnown RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 GTF2BQ00403 316 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 PTK7Q13308 1070 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 DYNC1I2Q13409 638 aaKnown RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 MTMR1Q13613 665 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 TLR1Q15399 786 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 ZNF394Q53GI3 561 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 RAB6CQ53S08 254 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 PPP6R3Q5H9R7 873 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 TCHHL1Q5QJ38 904 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 ZBTB41Q5SVQ8 909 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 SPOCD1Q6ZMY3 1216 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 EEPD1Q7L9B9 569 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 NCAPG2Q86XI2 1143 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 TMPRSS6Q8IU80 811 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 KIAA0319LQ8IZA0 1049 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 CCDC110Q8TBZ0 833 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 ACTL9Q8TC94 416 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 FAM172AQ8WUF8 416 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms