RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 RNF19BQ6ZMZ0 732 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 BEND5Q7L4P6 421 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 TMC7Q7Z402 723 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 SPATA2LQ8IUW3 424 aaPredicted RBP10.12□□□□□ -0.79
LIMA1-211ENST00000552338 TXLNBQ8N3L3 684 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 ZNF276Q8N554 614 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 C1orf131Q8NDD1 294 aaKnown RBP10.12□□□□□ -0.79
LIMA1-211ENST00000552338 KIAA1524Q8TCG1 905 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 SECISBP2LQ93073 1101 aaKnown RBP10.12□□□□□ -0.79
LIMA1-211ENST00000552338 MCRS1Q96EZ8 462 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 TRIM11Q96F44 468 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 CDCA3Q99618 268 aaPredicted RBP10.12□□□□□ -0.79
LIMA1-211ENST00000552338 TCF25Q9BQ70 676 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 LPIN3Q9BQK8 851 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 EMILIN2Q9BXX0 1053 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 RHOBTB2Q9BYZ6 727 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 DMAP1Q9NPF5 467 aaPredicted RBP10.12□□□□□ -0.79
LIMA1-211ENST00000552338 LUC7LQ9NQ29 371 aaKnown RBP10.12□□□□□ -0.79
LIMA1-211ENST00000552338 FAM49BQ9NUQ9 324 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.12□□□□□ -0.79
LIMA1-211ENST00000552338 FBXW11Q9UKB1 542 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 COLQQ9Y215 455 aaPredicted RBP10.12□□□□□ -0.79
LIMA1-211ENST00000552338 ZKSCAN5Q9Y2L8 839 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 PCDHA13Q9Y5I0 950 aa10.12□□□□□ -0.79
LIMA1-211ENST00000552338 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.12□□□□□ -0.79
LIMA1-211ENST00000552338 OBSL1O75147 1896 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 M0QYV0 167 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 CLDN5O00501 218 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 AP1G2O75843 785 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 MTA2O94776 668 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 CALB1P05937 261 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 H2AFZP0C0S5 128 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 OR4Q2P0C623 313 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 BDNFP23560 247 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 MAGEA1P43355 309 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 NSFP46459 744 aaKnown RBP10.11□□□□□ -0.79
LIMA1-211ENST00000552338 CLCN4P51793 760 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 VAV2P52735 878 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 CACNA2D1P54289 1103 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 GALCP54803 685 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 SLC8A3P57103 927 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 PDCLQ13371 301 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 SPA17Q15506 151 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 PTPN20Q4JDL3 420 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 PPP1R15BQ5SWA1 713 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 CCDC122Q5T0U0 273 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 TAF3Q5VWG9 929 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 TMEM184AQ6ZMB5 413 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 H2AFVQ71UI9 128 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 PIGZQ86VD9 579 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 ERICH1Q86X53 443 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 MSANTD4Q8NCY6 345 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 SLC22A17Q8WUG5 538 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 C18orf8Q96DM3 657 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 MRPL38Q96DV4 380 aaKnown RBP10.11□□□□□ -0.79
LIMA1-211ENST00000552338 MYRFLQ96LU7 910 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 ZNF830Q96NB3 372 aaPredicted RBP10.11□□□□□ -0.79
LIMA1-211ENST00000552338 NOX5Q96PH1 765 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 CPXM1Q96SM3 734 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.11□□□□□ -0.79
LIMA1-211ENST00000552338 TTLL2Q9BWV7 592 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 CRISPLD1Q9H336 500 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 PLEKHA4Q9H4M7 779 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 CNGB3Q9NQW8 809 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 SPTLC3Q9NUV7 552 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 ASNSD1Q9NWL6 643 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 TAS2R14Q9NYV8 317 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 STRIP2Q9ULQ0 834 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 NOTCH4Q99466 2003 aa10.11□□□□□ -0.79
LIMA1-211ENST00000552338 EPOPA6NHQ4 379 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 HIDE1A8MVS5 230 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 TULP2O00295 520 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 TGM5O43548 720 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 FBXO21O94952 628 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 IPO7O95373 1038 aaKnown RBP10.1□□□□□ -0.79
LIMA1-211ENST00000552338 SEC24AO95486 1093 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 CYP1A2P05177 515 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 GLI1P08151 1106 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 CCDC175P0C221 793 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 CPB1P15086 417 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 CYP2F1P24903 491 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 IRS1P35568 1242 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 DEKP35659 375 aaKnown RBP10.1□□□□□ -0.79
LIMA1-211ENST00000552338 RPL10AP62906 217 aaKnown RBP10.1□□□□□ -0.79
LIMA1-211ENST00000552338 GPC5P78333 572 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 CYP27A1Q02318 531 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 ADCY1Q08828 1119 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 PTPROQ16827 1216 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 DUSP6Q16828 381 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 CCDC142Q17RM4 750 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 SNX30Q5VWJ9 437 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 NAA35Q5VZE5 725 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 TOGARAM2Q6ZUX3 1019 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 XYLT1Q86Y38 959 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 REXO1L1PQ8IX06 675 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 RHOT2Q8IXI1 618 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 RNF10Q8N5U6 811 aaKnown RBP10.1□□□□□ -0.79
LIMA1-211ENST00000552338 ATAD1Q8NBU5 361 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 C3orf20Q8ND61 904 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 UBA3Q8TBC4 463 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms