RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 NR3C1P04150 777 aa11.59□□□□□ -0.55
VTI1BP3-201ENST00000550220 RPL13P26373 211 aaKnown RBP11.59□□□□□ -0.55
VTI1BP3-201ENST00000550220 IFNAR2P48551 515 aa11.59□□□□□ -0.55
VTI1BP3-201ENST00000550220 ARHGAP8P85298 464 aa11.59□□□□□ -0.55
VTI1BP3-201ENST00000550220 SATB1Q01826 763 aa11.59□□□□□ -0.55
VTI1BP3-201ENST00000550220 ENPEPQ07075 957 aa11.59□□□□□ -0.55
VTI1BP3-201ENST00000550220 NCOA4Q13772 614 aa11.59□□□□□ -0.55
VTI1BP3-201ENST00000550220 PUM1Q14671 1186 aaKnown RBP eCLIP11.59□□□□□ -0.55
VTI1BP3-201ENST00000550220 ZNF699Q32M78 642 aa11.59□□□□□ -0.55
VTI1BP3-201ENST00000550220 MDH1BQ5I0G3 518 aa11.59□□□□□ -0.55
VTI1BP3-201ENST00000550220 TXNDC11Q6PKC3 985 aa11.59□□□□□ -0.55
VTI1BP3-201ENST00000550220 KIAA2013Q8IYS2 634 aa11.59□□□□□ -0.55
VTI1BP3-201ENST00000550220 B3GALNT2Q8NCR0 500 aa11.59□□□□□ -0.55
VTI1BP3-201ENST00000550220 PDZD8Q8NEN9 1154 aa11.59□□□□□ -0.55
VTI1BP3-201ENST00000550220 OVCA2Q8WZ82 227 aa11.59□□□□□ -0.55
VTI1BP3-201ENST00000550220 FAM84AQ96KN4 292 aa11.59□□□□□ -0.55
VTI1BP3-201ENST00000550220 XYLT2Q9H1B5 865 aa11.59□□□□□ -0.55
VTI1BP3-201ENST00000550220 KCTD10Q9H3F6 313 aa11.59□□□□□ -0.55
VTI1BP3-201ENST00000550220 EBF3Q9H4W6 596 aa11.59□□□□□ -0.55
VTI1BP3-201ENST00000550220 ECT2Q9H8V3 914 aa11.59□□□□□ -0.55
VTI1BP3-201ENST00000550220 HPS4Q9NQG7 708 aa11.59□□□□□ -0.55
VTI1BP3-201ENST00000550220 COMMD8Q9NX08 183 aa11.59□□□□□ -0.55
VTI1BP3-201ENST00000550220 GCNT4Q9P109 453 aa11.59□□□□□ -0.55
VTI1BP3-201ENST00000550220 TRAF3IP3Q9Y228 551 aa11.59□□□□□ -0.55
VTI1BP3-201ENST00000550220 ANK1P16157 1881 aa11.58□□□□□ -0.56
VTI1BP3-201ENST00000550220 ZNF840PA6NDX5 716 aa11.58□□□□□ -0.56
VTI1BP3-201ENST00000550220 HCRTO43612 131 aa11.58□□□□□ -0.56
VTI1BP3-201ENST00000550220 LRP3O75074 770 aa11.58□□□□□ -0.56
VTI1BP3-201ENST00000550220 TADA3O75528 432 aa11.58□□□□□ -0.56
VTI1BP3-201ENST00000550220 RHOBTB3O94955 611 aa11.58□□□□□ -0.56
VTI1BP3-201ENST00000550220 CLSTN1O94985 981 aa11.58□□□□□ -0.56
VTI1BP3-201ENST00000550220 NFATC1O95644 943 aa11.58□□□□□ -0.56
VTI1BP3-201ENST00000550220 LMNB2Q03252 620 aa11.58□□□□□ -0.56
VTI1BP3-201ENST00000550220 SIM2Q14190 667 aaPredicted RBP11.58□□□□□ -0.56
VTI1BP3-201ENST00000550220 GAS6Q14393 721 aa11.58□□□□□ -0.56
VTI1BP3-201ENST00000550220 ZNF77Q15935 545 aa11.58□□□□□ -0.56
VTI1BP3-201ENST00000550220 NFIL3Q16649 462 aa11.58□□□□□ -0.56
VTI1BP3-201ENST00000550220 LAIR1Q6GTX8 287 aa11.58□□□□□ -0.56
VTI1BP3-201ENST00000550220 DDX42Q86XP3 938 aaKnown RBP eCLIP11.58□□□□□ -0.56
VTI1BP3-201ENST00000550220 GRAMD1CQ8IYS0 662 aa11.58□□□□□ -0.56
VTI1BP3-201ENST00000550220 NUP93Q8N1F7 819 aa11.58□□□□□ -0.56
VTI1BP3-201ENST00000550220 CAMKK1Q8N5S9 505 aa11.58□□□□□ -0.56
VTI1BP3-201ENST00000550220 ARL14EPQ8N8R7 260 aaPredicted RBP11.58□□□□□ -0.56
VTI1BP3-201ENST00000550220 KIAA0895Q8NCT3 520 aa11.58□□□□□ -0.56
VTI1BP3-201ENST00000550220 STKLD1Q8NE28 680 aa11.58□□□□□ -0.56
VTI1BP3-201ENST00000550220 CYP2S1Q96SQ9 504 aa11.58□□□□□ -0.56
VTI1BP3-201ENST00000550220 P2RY13Q9BPV8 354 aa11.58□□□□□ -0.56
VTI1BP3-201ENST00000550220 RBM12Q9NTZ6 932 aaKnown RBP11.58□□□□□ -0.56
VTI1BP3-201ENST00000550220 SLC8A2Q9UPR5 921 aa11.58□□□□□ -0.56
VTI1BP3-201ENST00000550220 MIA3Q5JRA6 1907 aa11.58□□□□□ -0.56
VTI1BP3-201ENST00000550220 LRRIQ3A6PVS8 624 aaPredicted RBP11.57□□□□□ -0.56
VTI1BP3-201ENST00000550220 CHURC1-FNTBB4DL54 471 aa11.57□□□□□ -0.56
VTI1BP3-201ENST00000550220 F8VP50 259 aa11.57□□□□□ -0.56
VTI1BP3-201ENST00000550220 K7ESF4 209 aa11.57□□□□□ -0.56
VTI1BP3-201ENST00000550220 RETP07949 1114 aa11.57□□□□□ -0.56
VTI1BP3-201ENST00000550220 YWHAQP27348 245 aa11.57□□□□□ -0.56
VTI1BP3-201ENST00000550220 GJA4P35212 333 aa11.57□□□□□ -0.56
VTI1BP3-201ENST00000550220 GALK1P51570 392 aa11.57□□□□□ -0.56
VTI1BP3-201ENST00000550220 SLC7A9P82251 487 aa11.57□□□□□ -0.56
VTI1BP3-201ENST00000550220 TAF10Q12962 218 aa11.57□□□□□ -0.56
VTI1BP3-201ENST00000550220 USP4Q13107 963 aa11.57□□□□□ -0.56
VTI1BP3-201ENST00000550220 ZACNQ401N2 412 aa11.57□□□□□ -0.56
VTI1BP3-201ENST00000550220 CEP135Q66GS9 1140 aa11.57□□□□□ -0.56
VTI1BP3-201ENST00000550220 TRIM68Q6AZZ1 485 aa11.57□□□□□ -0.56
VTI1BP3-201ENST00000550220 INTS8Q75QN2 995 aaKnown RBP11.57□□□□□ -0.56
VTI1BP3-201ENST00000550220 UNC93AQ86WB7 457 aa11.57□□□□□ -0.56
VTI1BP3-201ENST00000550220 CCDC150Q8NCX0 1101 aa11.57□□□□□ -0.56
VTI1BP3-201ENST00000550220 SH3RF2Q8TEC5 729 aa11.57□□□□□ -0.56
VTI1BP3-201ENST00000550220 GTPBP4Q9BZE4 634 aaKnown RBP11.57□□□□□ -0.56
VTI1BP3-201ENST00000550220 IMPG2Q9BZV3 1241 aa11.57□□□□□ -0.56
VTI1BP3-201ENST00000550220 GZF1Q9H116 711 aaPredicted RBP11.57□□□□□ -0.56
VTI1BP3-201ENST00000550220 CFAP54Q96N23 3096 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 C2orf78A6NCI8 922 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 LEFTY2O00292 366 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 OLFM2O95897 454 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 KRT13P13646 458 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 ARSAP15289 507 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 FNTBP49356 437 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 CASP4P49662 377 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 TUBP50607 506 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 VAMP7P51809 220 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 NDUFA8P51970 172 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 BECN1Q14457 450 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 CCDC142Q17RM4 750 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 EML3Q32P44 896 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 FSTL4Q6MZW2 842 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 KRBA2Q6ZNG9 492 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 PRR23BQ6ZRT6 265 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 Q6ZS52 159 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 SV2AQ7L0J3 742 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 WDR5BQ86VZ2 330 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 CRYBG2Q8N1P7 616 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 GUF1Q8N442 669 aaKnown RBP11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 DCLK2Q8N568 766 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 CD101Q93033 1021 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 ACDQ96AP0 544 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 SMARCD1Q96GM5 515 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 SLC22A12Q96S37 553 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 MED10Q9BTT4 135 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 B3GNT5Q9BYG0 378 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms