RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 HCN4Q9Y3Q4 1203 aa13.92□□□□□ -0.18
LTBR-208ENST00000541005 MYOFQ9NZM1 2061 aa13.92□□□□□ -0.18
LTBR-208ENST00000541005 HEPACAM2A8MVW5 462 aa13.91□□□□□ -0.18
LTBR-208ENST00000541005 ARNTLO00327 626 aa13.91□□□□□ -0.18
LTBR-208ENST00000541005 PRAMEF12O95522 483 aa13.91□□□□□ -0.18
LTBR-208ENST00000541005 CD58P19256 250 aa13.91□□□□□ -0.18
LTBR-208ENST00000541005 TBXAS1P24557 533 aaPredicted RBP13.91□□□□□ -0.18
LTBR-208ENST00000541005 PPP3CCP48454 512 aa13.91□□□□□ -0.18
LTBR-208ENST00000541005 CLCN5P51795 746 aa13.91□□□□□ -0.18
LTBR-208ENST00000541005 NUBP1P53384 320 aa13.91□□□□□ -0.18
LTBR-208ENST00000541005 USP46P62068 366 aa13.91□□□□□ -0.18
LTBR-208ENST00000541005 ORC1Q13415 861 aa13.91□□□□□ -0.18
LTBR-208ENST00000541005 CUL2Q13617 745 aa13.91□□□□□ -0.18
LTBR-208ENST00000541005 ZNF268Q14587 947 aaPredicted RBP13.91□□□□□ -0.18
LTBR-208ENST00000541005 PHLDB3Q6NSJ2 640 aa13.91□□□□□ -0.18
LTBR-208ENST00000541005 UBR7Q8N806 425 aa13.91□□□□□ -0.18
LTBR-208ENST00000541005 C12orf29Q8N999 325 aa13.91□□□□□ -0.18
LTBR-208ENST00000541005 LMO3Q8TAP4 145 aa13.91□□□□□ -0.18
LTBR-208ENST00000541005 SLC2A14Q8TDB8 520 aa13.91□□□□□ -0.18
LTBR-208ENST00000541005 TATDN2Q93075 761 aa13.91□□□□□ -0.18
LTBR-208ENST00000541005 CNOT6LQ96LI5 555 aaKnown RBP13.91□□□□□ -0.18
LTBR-208ENST00000541005 DDX23Q9BUQ8 820 aaKnown RBP13.91□□□□□ -0.18
LTBR-208ENST00000541005 TRMT61BQ9BVS5 477 aaKnown RBP13.91□□□□□ -0.18
LTBR-208ENST00000541005 KIF9Q9HAQ2 790 aa13.91□□□□□ -0.18
LTBR-208ENST00000541005 CISHQ9NSE2 258 aa13.91□□□□□ -0.18
LTBR-208ENST00000541005 IL37Q9NZH6 218 aa13.91□□□□□ -0.18
LTBR-208ENST00000541005 DACH1Q9UI36 760 aa13.91□□□□□ -0.18
LTBR-208ENST00000541005 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.91□□□□□ -0.18
LTBR-208ENST00000541005 FAM92AA1XBS5 289 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 TNFRSF10BO14763 440 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 AP1G2O75843 785 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 RTN3O95197 1032 aaPredicted RBP13.9□□□□□ -0.18
LTBR-208ENST00000541005 MBD3O95983 291 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 AFPP02771 609 aaKnown RBP13.9□□□□□ -0.18
LTBR-208ENST00000541005 RAD23BP54727 409 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 VCPP55072 806 aaKnown RBP13.9□□□□□ -0.18
LTBR-208ENST00000541005 STARD6P59095 220 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 YWHAEP62258 255 aaKnown RBP13.9□□□□□ -0.18
LTBR-208ENST00000541005 PRKCQQ04759 706 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 CETN1Q12798 172 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 KCNH2Q12809 1159 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 GRM2Q14416 872 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 MLF2Q15773 248 aaPredicted RBP13.9□□□□□ -0.18
LTBR-208ENST00000541005 ASTLQ6HA08 431 aaPredicted RBP13.9□□□□□ -0.18
LTBR-208ENST00000541005 IRF2BP1Q8IU81 584 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 NUP93Q8N1F7 819 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 CELF5Q8N6W0 485 aaKnown RBP13.9□□□□□ -0.18
LTBR-208ENST00000541005 MAB21L3Q8N8X9 362 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 ZMIZ2Q8NF64 920 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 OVCA2Q8WZ82 227 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 IRF7Q92985 503 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 SHDQ96IW2 340 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 NT5C1BQ96P26 610 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 SMOQ99835 787 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 MED10Q9BTT4 135 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 MFSD1Q9H3U5 465 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 THAP9Q9H5L6 903 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 PNPLA8Q9NP80 782 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 FAM49BQ9NUQ9 324 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 COMMD8Q9NX08 183 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 GCNT4Q9P109 453 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 CA14Q9ULX7 337 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 KIAA1549LQ6ZVL6 1849 aa13.9□□□□□ -0.18
LTBR-208ENST00000541005 ZNF840PA6NDX5 716 aa13.89□□□□□ -0.19
LTBR-208ENST00000541005 CHADO15335 359 aa13.89□□□□□ -0.19
LTBR-208ENST00000541005 OLFM2O95897 454 aa13.89□□□□□ -0.19
LTBR-208ENST00000541005 FAM200BP0CF97 657 aa13.89□□□□□ -0.19
LTBR-208ENST00000541005 TCF3P15923 654 aa13.89□□□□□ -0.19
LTBR-208ENST00000541005 AOC1P19801 751 aa13.89□□□□□ -0.19
LTBR-208ENST00000541005 AVPR2P30518 371 aa13.89□□□□□ -0.19
LTBR-208ENST00000541005 GDI1P31150 447 aa13.89□□□□□ -0.19
LTBR-208ENST00000541005 AVPR1AP37288 418 aa13.89□□□□□ -0.19
LTBR-208ENST00000541005 PDE6CP51160 858 aa13.89□□□□□ -0.19
LTBR-208ENST00000541005 SLC5A3P53794 718 aa13.89□□□□□ -0.19
LTBR-208ENST00000541005 MLLT6P55198 1093 aaPredicted RBP13.89□□□□□ -0.19
LTBR-208ENST00000541005 TXNDC8Q6A555 127 aa13.89□□□□□ -0.19
LTBR-208ENST00000541005 SLC4A11Q8NBS3 891 aa13.89□□□□□ -0.19
LTBR-208ENST00000541005 USP13Q92995 863 aaPredicted RBP13.89□□□□□ -0.19
LTBR-208ENST00000541005 CYFIP2Q96F07 1278 aa13.89□□□□□ -0.19
LTBR-208ENST00000541005 LRRC3BQ96PB8 259 aa13.89□□□□□ -0.19
LTBR-208ENST00000541005 SLITRK1Q96PX8 696 aa13.89□□□□□ -0.19
LTBR-208ENST00000541005 KCNK16Q96T55 309 aa13.89□□□□□ -0.19
LTBR-208ENST00000541005 BRD9Q9H8M2 597 aa13.89□□□□□ -0.19
LTBR-208ENST00000541005 TBC1D17Q9HA65 648 aa13.89□□□□□ -0.19
LTBR-208ENST00000541005 TRAV19A0A0A6YYK7 116 aa13.88□□□□□ -0.19
LTBR-208ENST00000541005 GTPBP10A4D1E9 387 aaKnown RBP13.88□□□□□ -0.19
LTBR-208ENST00000541005 HHLA1C9JL84 531 aa13.88□□□□□ -0.19
LTBR-208ENST00000541005 ZNF263O14978 683 aa13.88□□□□□ -0.19
LTBR-208ENST00000541005 BEST1O76090 585 aa13.88□□□□□ -0.19
LTBR-208ENST00000541005 USP17L7P0C7H9 530 aa13.88□□□□□ -0.19
LTBR-208ENST00000541005 YWHAQP27348 245 aa13.88□□□□□ -0.19
LTBR-208ENST00000541005 PLCB2Q00722 1185 aa13.88□□□□□ -0.19
LTBR-208ENST00000541005 GCNT1Q02742 428 aa13.88□□□□□ -0.19
LTBR-208ENST00000541005 TAF10Q12962 218 aa13.88□□□□□ -0.19
LTBR-208ENST00000541005 USP4Q13107 963 aa13.88□□□□□ -0.19
LTBR-208ENST00000541005 ARHGAP29Q52LW3 1261 aa13.88□□□□□ -0.19
LTBR-208ENST00000541005 SLC44A4Q53GD3 710 aa13.88□□□□□ -0.19
LTBR-208ENST00000541005 IER5LQ5T953 404 aa13.88□□□□□ -0.19
LTBR-208ENST00000541005 SNX30Q5VWJ9 437 aa13.88□□□□□ -0.19
LTBR-208ENST00000541005 ARHGAP17Q68EM7 881 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms