RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 LZTFL1Q9NQ48 299 aa8.93□□□□□ -0.98
CHD4-208ENST00000540960 GPRC5CQ9NQ84 441 aa8.93□□□□□ -0.98
CHD4-208ENST00000540960 XPNPEP1Q9NQW7 623 aa8.93□□□□□ -0.98
CHD4-208ENST00000540960 PRMT7Q9NVM4 692 aaPredicted RBP8.93□□□□□ -0.98
CHD4-208ENST00000540960 SUCLA2Q9P2R7 463 aaPredicted RBP8.93□□□□□ -0.98
CHD4-208ENST00000540960 DNAJB4Q9UDY4 337 aa8.93□□□□□ -0.98
CHD4-208ENST00000540960 AGO2Q9UKV8 859 aaKnown RBP8.93□□□□□ -0.98
CHD4-208ENST00000540960 COQ4Q9Y3A0 265 aa8.93□□□□□ -0.98
CHD4-208ENST00000540960 PCDHGA5Q9Y5G8 931 aa8.93□□□□□ -0.98
CHD4-208ENST00000540960 PTPRQQ9UMZ3 2332 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 ABCA7Q8IZY2 2146 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 PTPRBP23467 1997 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 PDCD11Q14690 1871 aaKnown RBP8.92□□□□□ -0.98
CHD4-208ENST00000540960 EFCAB8A8MWE9 144 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 PATE3B3GLJ2 98 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 ACKR2O00590 384 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 NRG2O14511 850 aaPredicted RBP8.92□□□□□ -0.98
CHD4-208ENST00000540960 RIOK3O14730 519 aaKnown RBP8.92□□□□□ -0.98
CHD4-208ENST00000540960 HOXA2O43364 376 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 RPP40O75818 363 aaKnown RBP8.92□□□□□ -0.98
CHD4-208ENST00000540960 NOL4O94818 638 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 IL18RAPO95256 599 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 TBXAS1P24557 533 aaPredicted RBP8.92□□□□□ -0.98
CHD4-208ENST00000540960 MCM3P25205 808 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 MATR3P43243 847 aaKnown RBP eCLIP8.92□□□□□ -0.98
CHD4-208ENST00000540960 GPC3P51654 580 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 YWHAEP62258 255 aaKnown RBP8.92□□□□□ -0.98
CHD4-208ENST00000540960 CLDN10P78369 228 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 CYP24A1Q07973 514 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 GOLGA8FQ08AF8 430 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 GOLGA8DPQ0D2H9 430 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 LAMTOR4Q0VGL1 99 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 FAM187BQ17R55 369 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 TMEM132AQ24JP5 1023 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 CDCA2Q69YH5 1023 aaPredicted RBP8.92□□□□□ -0.98
CHD4-208ENST00000540960 PCSK4Q6UW60 755 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 FAM43BQ6ZT52 329 aaPredicted RBP8.92□□□□□ -0.98
CHD4-208ENST00000540960 MTSS1LQ765P7 747 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 ZNF410Q86VK4 478 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 PALB2Q86YC2 1186 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 IFNLR1Q8IU57 520 aaPredicted RBP8.92□□□□□ -0.98
CHD4-208ENST00000540960 SYCE1Q8N0S2 351 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 TTC39CQ8N584 583 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 FBXL13Q8NEE6 735 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 PARD3BQ8TEW8 1205 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 PRPF31Q8WWY3 499 aaKnown RBP8.92□□□□□ -0.98
CHD4-208ENST00000540960 FAM3CQ92520 227 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 UBXN4Q92575 508 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 PCYT2Q99447 389 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 CHP1Q99653 195 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 CBWD1Q9BRT8 395 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 CRACR2AQ9BSW2 395 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 DESI2Q9BSY9 194 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 TCHPQ9BT92 498 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.92□□□□□ -0.98
CHD4-208ENST00000540960 MSTO1Q9BUK6 570 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 PRKD2Q9BZL6 878 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 NRDE2Q9H7Z3 1164 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 NLRC4Q9NPP4 1024 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 TMEM9BQ9NQ34 198 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 ARGLU1Q9NWB6 273 aaPredicted RBP8.92□□□□□ -0.98
CHD4-208ENST00000540960 LCMT1Q9UIC8 334 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 DNAJC12Q9UKB3 198 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 JRKLQ9Y4A0 524 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 ZFP37Q9Y6Q3 630 aaPredicted RBP8.92□□□□□ -0.98
CHD4-208ENST00000540960 COL6A6A6NMZ7 2263 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 ATG2BQ96BY7 2078 aa8.92□□□□□ -0.98
CHD4-208ENST00000540960 A0A0A6YYK5 440 aaPredicted RBP8.91□□□□□ -0.98
CHD4-208ENST00000540960 A0A0B4J269 797 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 GPR182O15218 404 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 CTIFO43310 598 aaKnown RBP8.91□□□□□ -0.98
CHD4-208ENST00000540960 PAPSS2O95340 614 aaPredicted RBP8.91□□□□□ -0.98
CHD4-208ENST00000540960 GLUD1P00367 558 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 NTRK1P04629 796 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 H2AFZP0C0S5 128 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 TCP1P17987 556 aaKnown RBP8.91□□□□□ -0.98
CHD4-208ENST00000540960 SLC9A1P19634 815 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 ATP4AP20648 1035 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 SLC11A1P49279 550 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 JAM2P57087 298 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 GCNT1Q02742 428 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 CREB5Q02930 508 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 NAB2Q15742 525 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 COLEC12Q5KU26 742 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 CCNI2Q6ZMN8 369 aaPredicted RBP8.91□□□□□ -0.98
CHD4-208ENST00000540960 H2AFVQ71UI9 128 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 TRMT1LQ7Z2T5 733 aaKnown RBP8.91□□□□□ -0.98
CHD4-208ENST00000540960 SRGAP1Q7Z6B7 1085 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 ZNF598Q86UK7 904 aaKnown RBP8.91□□□□□ -0.98
CHD4-208ENST00000540960 ZNF677Q86XU0 584 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 NT5DC4Q86YG4 428 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 CD302Q8IX05 232 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 ZNF513Q8N8E2 541 aaPredicted RBP8.91□□□□□ -0.98
CHD4-208ENST00000540960 TMEM143Q96AN5 459 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 CEP89Q96ST8 783 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 OSMRQ99650 979 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 IER2Q9BTL4 223 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 PCIF1Q9H4Z3 704 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 RAB20Q9NX57 234 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 ARHGAP20Q9P2F6 1191 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms