RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 SLITRK1Q96PX8 696 aa12.91□□□□□ -0.34
AP003559.1-201ENST00000540906 RHOBTB2Q9BYZ6 727 aa12.91□□□□□ -0.34
AP003559.1-201ENST00000540906 SLITRK6Q9H5Y7 841 aa12.91□□□□□ -0.34
AP003559.1-201ENST00000540906 ZWILCHQ9H900 591 aa12.91□□□□□ -0.34
AP003559.1-201ENST00000540906 HESX1Q9UBX0 185 aa12.91□□□□□ -0.34
AP003559.1-201ENST00000540906 C3orf70A6NLC5 250 aaPredicted RBP12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 B3GAT3O94766 335 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 SETSIPP0DME0 302 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 LCP1P13796 627 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 TNFRSF8P28908 595 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 RPL9P32969 192 aaKnown RBP12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 RPL34P49207 117 aaKnown RBP12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 BCAT1P54687 386 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 TUSC3Q13454 348 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 PIGHQ14442 188 aaPredicted RBP12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 CYP1B1Q16678 543 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 CCDC14Q49A88 953 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 KCNT1Q5JUK3 1230 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 CCDC70Q6NSX1 233 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 SLC24A5Q71RS6 500 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 CCDC50Q8IVM0 306 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 EXD1Q8NHP7 514 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 FNIP1Q8TF40 1166 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 MAGOHBQ96A72 148 aaKnown RBP12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 HNRNPABQ99729 332 aaKnown RBP12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 SYT15Q9BQS2 421 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 TMLHEQ9NVH6 421 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 DNAJB4Q9UDY4 337 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 PCSK1NQ9UHG2 260 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 TANC1Q9C0D5 1861 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 ENPP3O14638 875 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 ERLIN1O75477 346 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 TUBBP07437 444 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 CD48P09326 243 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 GPD1P21695 349 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 MIPP30301 263 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 COILP38432 576 aaPredicted RBP12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 SLC6A3Q01959 620 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 SNX1Q13596 522 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 CASP8Q14790 479 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 MTERF4Q7Z6M4 381 aaKnown RBP12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 PIGZQ86VD9 579 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 TSEN2Q8NCE0 465 aaKnown RBP12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 ZMIZ2Q8NF64 920 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 OR10T2Q8NGX3 314 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 CFAP57Q96MR6 1250 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 NAP1L3Q99457 506 aaPredicted RBP12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 OSBPL8Q9BZF1 889 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 TRIM31Q9BZY9 425 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 DPH5Q9H2P9 285 aa12.9□□□□□ -0.34
AP003559.1-201ENST00000540906 DAPK3O43293 454 aa12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 SKIP12755 728 aa12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 NDUFV1P49821 464 aa12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 ZNF143P52747 638 aaPredicted RBP12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 ATXN1P54253 815 aaKnown RBP12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 CCL23P55773 120 aa12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 DR1Q01658 176 aa12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 DSC1Q08554 894 aa12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 ADCY1Q08828 1119 aa12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 CDO1Q16878 200 aa12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 PLEKHG4Q58EX7 1191 aa12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 LRRC38Q5VT99 294 aa12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 KAZNQ674X7 775 aa12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 SPOCD1Q6ZMY3 1216 aa12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 CLEC20AQ6ZU45 233 aa12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 SND1Q7KZF4 910 aaKnown RBP eCLIP12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 GPRIN1Q7Z2K8 1008 aa12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 LRRTM3Q86VH5 581 aa12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 JAMLQ86YT9 394 aa12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 IFT20Q8IY31 132 aa12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 C12orf50Q8NA57 414 aaPredicted RBP12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 STK32AQ8WU08 396 aa12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 RSPH1Q8WYR4 309 aa12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 RUBCNQ92622 972 aa12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 TNIP3Q96KP6 325 aa12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 SMOQ99835 787 aa12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 DUSP16Q9BY84 665 aa12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 DCLK3Q9C098 648 aa12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 TBC1D13Q9NVG8 400 aa12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 CALCOCO1Q9P1Z2 691 aa12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.89□□□□□ -0.35
AP003559.1-201ENST00000540906 NLRC5Q86WI3 1866 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 GOLGA6L10A0A0M3HER8 536 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 M0QZQ0 153 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 TRUB2O95900 331 aaKnown RBP12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 PDGFRAP16234 1089 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 TNNT3P45378 269 aaPredicted RBP12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 ATP11AP98196 1134 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 TRIM60Q495X7 471 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 CCDC137Q6PK04 289 aaKnown RBP12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 SLC39A5Q6ZMH5 540 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 FAM35AQ86V20 835 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 COLGALT2Q8IYK4 626 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 SEC14L1Q92503 715 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 VWCEQ96DN2 955 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 PCED1BQ96HM7 432 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 KCNK16Q96T55 309 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 PKMYT1Q99640 499 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 MED10Q9BTT4 135 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 MAGEB5Q9BZ81 275 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms