RNA–Protein interactions for RNA: ENST00000540783.5

RAPGEF4-215, Transcript of Rap guanine nucleotide exchange factor 4, human

TSL 2 BASIC

Gene RAPGEF4, Length 3,974 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAPGEF4-215	ENST00000540783	RHOT2	Q8IXI1	618 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	ZSWIM2	Q8NEG5	633 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	TMEM143	Q96AN5	459 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	DDX50	Q9BQ39	737 aa	Known RBP	5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	NUP85	Q9BW27	656 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	ANAPC5	Q9UJX4	755 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783		A0A1B0GUL6	1792 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	FRMPD4	Q14CM0	1322 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	CYP26A1	O43174	497 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	EIF4B	P23588	611 aa	Known RBP	5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	TAF1B	Q53T94	588 aa	Predicted RBP	5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	PLA2G4F	Q68DD2	849 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	RNF43	Q68DV7	783 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	HAUS6	Q7Z4H7	955 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	TRIM50	Q86XT4	487 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	CCDC60	Q8IWA6	550 aa	Predicted RBP	5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	LRRC71	Q8N4P6	559 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	ETNPPL	Q8TBG4	499 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	SLC7A6OS	Q96CW6	309 aa	Predicted RBP	5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	FAM84A	Q96KN4	292 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	MAGEB18	Q96M61	343 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	ZNF560	Q96MR9	790 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	ACAP3	Q96P50	834 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	PPP1R16B	Q96T49	567 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	NIFK	Q9BYG3	293 aa	Known RBP	5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	IRAK4	Q9NWZ3	460 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	R3HDM2	Q9Y2K5	976 aa	Known RBP	5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	CDY2A	Q9Y6F7	541 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	TRPM7	Q96QT4	1865 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	KLHL33	A6NCF5	533 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	MIF4GD	A9UHW6	222 aa	Known RBP	5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	MAF	O75444	373 aa	Predicted RBP	5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	ANXA13	P27216	316 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	RARRES1	P49788	294 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	IL9R	Q01113	521 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	SPIRE1	Q08AE8	756 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	RCN2	Q14257	317 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	TMEM63B	Q5T3F8	832 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	RINT1	Q6NUQ1	792 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	DSTYK	Q6XUX3	929 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	SLC47A2	Q86VL8	602 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	ZNF564	Q8TBZ8	553 aa	Predicted RBP	5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	ZNF653	Q96CK0	615 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	TSPAN18	Q96SJ8	248 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	SH2D3A	Q9BRG2	576 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	GRID1	Q9ULK0	1009 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	INPP5F	Q9Y2H2	1132 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	NUMBL	Q9Y6R0	609 aa		5.95	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	PITPNM1	O00562	1244 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	SLC16A3	O15427	465 aa	Known RBP	5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	ATP9A	O75110	1047 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	IL18RAP	O95256	599 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	CD4	P01730	458 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	FES	P07332	822 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	KRT15	P19012	456 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	ATP6V1C1	P21283	382 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	SP100	P23497	879 aa	Predicted RBP	5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	PPM1A	P35813	382 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	KLC1	Q07866	573 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	TRIM60	Q495X7	471 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	MAP3K21	Q5TCX8	1036 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	ATF7IP2	Q5U623	682 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	CNKSR3	Q6P9H4	555 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	NOP9	Q86U38	636 aa	Known RBP	5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	MTDH	Q86UE4	582 aa	Known RBP	5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	TAB3	Q8N5C8	712 aa	Predicted RBP	5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	PRPF31	Q8WWY3	499 aa	Known RBP	5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	DDX27	Q96GQ7	796 aa	Known RBP	5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	TMEM169	Q96HH4	297 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	RNPEP	Q9H4A4	650 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	NPHS2	Q9NP85	383 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	ZMYM2	Q9UBW7	1377 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	IGLV3-22	A0A075B6J6	115 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	GOLGA8IP	A6NC78	632 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	GOLGA8J	A6NMD2	632 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	MAPK13	O15264	365 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	SLC16A4	O15374	487 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	AHCYL1	O43865	530 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	KRT36	O76013	467 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	ATF2	P15336	505 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	RRM1	P23921	792 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	ATP5D	P30049	168 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	SSTR3	P32745	418 aa	Predicted RBP	5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	RPA3	P35244	121 aa	Predicted RBP	5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	SSR1	P43307	286 aa	Known RBP	5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	CCL23	P55773	120 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	PPP3CA	Q08209	521 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	KIZ	Q2M2Z5	673 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	FAM182A	Q5T1J6	154 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	CWF19L1	Q69YN2	538 aa	Known RBP	5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	ZC3H18	Q86VM9	953 aa	Known RBP	5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	THEM5	Q8N1Q8	247 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	PPM1K	Q8N3J5	372 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	CEP120	Q8N960	986 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	LRRC8C	Q8TDW0	803 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	ASAP3	Q8TDY4	903 aa		5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	KLF6	Q99612	283 aa	Predicted RBP	5.94	□□□□□ -1.46
RAPGEF4-215	ENST00000540783	LRMDA	Q9H2I8	198 aa		5.94	□□□□□ -1.46

Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms