RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 PACSIN2Q9UNF0 486 aaPredicted RBP14.8□□□□□ -0.04
COLCA1-204ENST00000540738 GPR25O00155 361 aa14.8□□□□□ -0.04
COLCA1-204ENST00000540738 ATP5BP06576 529 aaKnown RBP14.8□□□□□ -0.04
COLCA1-204ENST00000540738 POP1Q99575 1024 aaKnown RBP14.8□□□□□ -0.04
COLCA1-204ENST00000540738 RPTORQ8N122 1335 aa14.8□□□□□ -0.04
COLCA1-204ENST00000540738 FGF19O95750 216 aa14.8□□□□□ -0.04
COLCA1-204ENST00000540738 NCF2P19878 526 aaPredicted RBP14.8□□□□□ -0.04
COLCA1-204ENST00000540738 UGT3A1Q6NUS8 523 aa14.8□□□□□ -0.04
COLCA1-204ENST00000540738 DCLRE1AQ6PJP8 1040 aa14.8□□□□□ -0.04
COLCA1-204ENST00000540738 RNF135Q8IUD6 432 aa14.8□□□□□ -0.04
COLCA1-204ENST00000540738 SPG21Q9NZD8 308 aa14.8□□□□□ -0.04
COLCA1-204ENST00000540738 WDR91A4D1P6 747 aa14.8□□□□□ -0.04
COLCA1-204ENST00000540738 POLBP06746 335 aa14.8□□□□□ -0.04
COLCA1-204ENST00000540738 GLRA2P23416 452 aa14.8□□□□□ -0.04
COLCA1-204ENST00000540738 ACAT1P24752 427 aaKnown RBP14.8□□□□□ -0.04
COLCA1-204ENST00000540738 WEE1P30291 646 aa14.8□□□□□ -0.04
COLCA1-204ENST00000540738 SERPINB9P50453 376 aa14.8□□□□□ -0.04
COLCA1-204ENST00000540738 CRHR2Q13324 411 aa14.8□□□□□ -0.04
COLCA1-204ENST00000540738 FSCBQ5H9T9 825 aa14.8□□□□□ -0.04
COLCA1-204ENST00000540738 ERAP2Q6P179 960 aa14.8□□□□□ -0.04
COLCA1-204ENST00000540738 CTU1Q7Z7A3 348 aaKnown RBP14.8□□□□□ -0.04
COLCA1-204ENST00000540738 ENGASEQ8NFI3 743 aa14.8□□□□□ -0.04
COLCA1-204ENST00000540738 PNMA5Q96PV4 448 aa14.8□□□□□ -0.04
COLCA1-204ENST00000540738 EML4Q9HC35 981 aaKnown RBP14.8□□□□□ -0.04
COLCA1-204ENST00000540738 HPSEQ9Y251 543 aa14.8□□□□□ -0.04
COLCA1-204ENST00000540738 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.8□□□□□ -0.04
COLCA1-204ENST00000540738 NCAM2O15394 837 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 GCNT1Q02742 428 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 RBBP7Q16576 425 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 HS6ST3Q8IZP7 471 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 IL17RAQ96F46 866 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 YIPF2Q9BWQ6 316 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 ZC3H7BQ9UGR2 993 aaKnown RBP14.79□□□□□ -0.04
COLCA1-204ENST00000540738 TSPAN16Q9UKR8 245 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 AKAP3O75969 853 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 SMTNL2Q2TAL5 461 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 LRRC8DQ7L1W4 858 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 LMNTD2Q8IXW0 634 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 TSR3Q9UJK0 312 aaKnown RBP14.79□□□□□ -0.04
COLCA1-204ENST00000540738 TPX2Q9ULW0 747 aaKnown RBP14.79□□□□□ -0.04
COLCA1-204ENST00000540738 ALG6Q9Y672 507 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 ITIH2P19823 946 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 RTP1P59025 263 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 PRKCZQ05513 592 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 ARID5BQ14865 1188 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 NUGGCQ68CJ6 796 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 GJB7Q6PEY0 223 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 KIAA0319LQ8IZA0 1049 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 ADGRE3Q9BY15 652 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.79□□□□□ -0.04
COLCA1-204ENST00000540738 TRIM33Q9UPN9 1127 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 PCK1P35558 622 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 PSEN1P49768 467 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 ZNF135P52742 658 aaPredicted RBP14.79□□□□□ -0.04
COLCA1-204ENST00000540738 PTENP60484 403 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 TRADDQ15628 312 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 MTMR9Q96QG7 549 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 SERPINI1Q99574 410 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 XAB2Q9HCS7 855 aaKnown RBP14.79□□□□□ -0.04
COLCA1-204ENST00000540738 SGPL1O95470 568 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 SGCGQ13326 291 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 NNTQ13423 1086 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 TMA16Q96EY4 203 aaKnown RBP14.79□□□□□ -0.04
COLCA1-204ENST00000540738 C1QTNF7Q9BXJ2 289 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 GOLPH3Q9H4A6 298 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 PPCSQ9HAB8 311 aa14.79□□□□□ -0.04
COLCA1-204ENST00000540738 HEATR9A2RTY3 570 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 CAND2O75155 1236 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 FGRP09769 529 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 YWHAZP63104 245 aaKnown RBP14.78□□□□□ -0.04
COLCA1-204ENST00000540738 SMARCB1Q12824 385 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 STAT4Q14765 748 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 TTI2Q6NXR4 508 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 BCAS4Q8TDM0 211 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 TSEN34Q9BSV6 310 aaKnown RBP14.78□□□□□ -0.04
COLCA1-204ENST00000540738 SMPD4Q9NXE4 827 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 SRRDQ9UH36 339 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 AP4E1Q9UPM8 1137 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 FAM47DPA6NHR8 397 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 TXNDC9O14530 226 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 FBXW4P57775 412 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 PRKCQQ04759 706 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 PSMD5Q16401 504 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 CASS4Q9NQ75 786 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 CDH9Q9ULB4 789 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 ROBO3Q96MS0 1386 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 TMEM150BA6NC51 233 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 OR6C75A6NL08 312 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 CBX4O00257 560 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 GLUD1P00367 558 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 HMOX2P30519 316 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 MRNIPQ6NTE8 343 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 PARD6BQ9BYG5 372 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 Q9H521 79 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 PDGFCQ9NRA1 345 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 SENP1Q9P0U3 644 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 SERPIND1P05546 499 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 PKN2Q16513 984 aaKnown RBP14.78□□□□□ -0.04
COLCA1-204ENST00000540738 SLC24A5Q71RS6 500 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 LRP10Q7Z4F1 713 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms