RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 ALDH3B2P48448 385 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 CASP5P51878 434 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 TPTEP56180 551 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 NPTX1Q15818 432 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 DCAF8Q5TAQ9 597 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 TTC7BQ86TV6 843 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 DEPDC4Q8N2C3 294 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 ANGPTL6Q8NI99 470 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 SHKBP1Q8TBC3 707 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 PMEPA1Q969W9 287 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 VPS35Q96QK1 796 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 CABP5Q9NP86 173 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 ARMC1Q9NVT9 282 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 EBF1Q9UH73 591 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 PADI4Q9UM07 663 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 CORINQ9Y5Q5 1042 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 MAST3O60307 1309 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 TRIM75PA6NK02 468 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 H3BUI4 141 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 CCRL2O00421 344 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 SCO2O43819 266 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 MYO1DO94832 1006 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 ALX3O95076 343 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 CETPP11597 493 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 CCDC130P13994 396 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 BMXP51813 675 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 NKX2-5P52952 324 aaPredicted RBP9.86□□□□□ -0.83
CLIP1-214ENST00000540539 PEX3P56589 373 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 ARHGAP4P98171 946 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 UBE4AQ14139 1066 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 NFE2Q16621 373 aaPredicted RBP9.86□□□□□ -0.83
CLIP1-214ENST00000540539 APOA5Q6Q788 366 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 ELMOD2Q8IZ81 293 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 RBM15BQ8NDT2 890 aaKnown RBP9.86□□□□□ -0.83
CLIP1-214ENST00000540539 GIMAP5Q96F15 307 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 THTPAQ9BU02 230 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 OSBPL8Q9BZF1 889 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 RUBCNLQ9H714 662 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 ABI2Q9NYB9 513 aaPredicted RBP9.86□□□□□ -0.83
CLIP1-214ENST00000540539 STK17AQ9UEE5 414 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 KCNN3Q9UGI6 736 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 CFL2Q9Y281 166 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 NRXN2Q9P2S2 1712 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 TNPO2O14787 897 aaKnown RBP9.86□□□□□ -0.83
CLIP1-214ENST00000540539 CYP26A1O43174 497 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 CCNT1O60563 726 aaKnown RBP9.86□□□□□ -0.83
CLIP1-214ENST00000540539 ZBTB7AO95365 584 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 CRTAMO95727 393 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 SERPING1P05155 500 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 POLR2CP19387 275 aaPredicted RBP9.86□□□□□ -0.83
CLIP1-214ENST00000540539 PRDX6P30041 224 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 ATICP31939 592 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 GALNT1Q10472 559 aaPredicted RBP9.86□□□□□ -0.83
CLIP1-214ENST00000540539 OXA1LQ15070 435 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 SF3B3Q15393 1217 aaKnown RBP9.86□□□□□ -0.83
CLIP1-214ENST00000540539 HP1BP3Q5SSJ5 553 aaPredicted RBP9.86□□□□□ -0.83
CLIP1-214ENST00000540539 TRMT10CQ7L0Y3 403 aaKnown RBP9.86□□□□□ -0.83
CLIP1-214ENST00000540539 TAS2R42Q7RTR8 314 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 KIAA2013Q8IYS2 634 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 SAMD14Q8IZD0 417 aaPredicted RBP9.86□□□□□ -0.83
CLIP1-214ENST00000540539 GSTCDQ8NEC7 633 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 HSPH1Q92598 858 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 THAP11Q96EK4 314 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 FAM117AQ9C073 453 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 GREM2Q9H772 168 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 CAAP1Q9H8G2 361 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 POLMQ9NP87 494 aaPredicted RBP9.86□□□□□ -0.83
CLIP1-214ENST00000540539 CDH7Q9ULB5 785 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 ATP11BQ9Y2G3 1177 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 NOSIPQ9Y314 301 aaKnown RBP9.86□□□□□ -0.83
CLIP1-214ENST00000540539 DTNAQ9Y4J8 743 aa9.86□□□□□ -0.83
CLIP1-214ENST00000540539 A0A0G2JND7 137 aa9.85□□□□□ -0.83
CLIP1-214ENST00000540539 BTNL10A8MVZ5 291 aa9.85□□□□□ -0.83
CLIP1-214ENST00000540539 PSMD12O00232 456 aaPredicted RBP9.85□□□□□ -0.83
CLIP1-214ENST00000540539 PEX1O43933 1283 aa9.85□□□□□ -0.83
CLIP1-214ENST00000540539 ACSL4O60488 711 aa9.85□□□□□ -0.83
CLIP1-214ENST00000540539 ABCB7O75027 752 aa9.85□□□□□ -0.83
CLIP1-214ENST00000540539 TTLL1O95922 423 aa9.85□□□□□ -0.83
CLIP1-214ENST00000540539 FAM58BPP0C7Q3 252 aa9.85□□□□□ -0.83
CLIP1-214ENST00000540539 RPL17P18621 184 aaKnown RBP9.85□□□□□ -0.83
CLIP1-214ENST00000540539 M6PRP20645 277 aa9.85□□□□□ -0.83
CLIP1-214ENST00000540539 ARL1P40616 181 aaPredicted RBP9.85□□□□□ -0.83
CLIP1-214ENST00000540539 NR4A2P43354 598 aa9.85□□□□□ -0.83
CLIP1-214ENST00000540539 CTBSQ01459 385 aa9.85□□□□□ -0.83
CLIP1-214ENST00000540539 DHX34Q14147 1143 aaKnown RBP9.85□□□□□ -0.83
CLIP1-214ENST00000540539 SPARCL1Q14515 664 aa9.85□□□□□ -0.83
CLIP1-214ENST00000540539 OASLQ15646 514 aaKnown RBP9.85□□□□□ -0.83
CLIP1-214ENST00000540539 LSM12Q3MHD2 195 aaKnown RBP9.85□□□□□ -0.83
CLIP1-214ENST00000540539 NXNQ6DKJ4 435 aa9.85□□□□□ -0.83
CLIP1-214ENST00000540539 TMC5Q6UXY8 1006 aa9.85□□□□□ -0.83
CLIP1-214ENST00000540539 RALYLQ86SE5 291 aaKnown RBP9.85□□□□□ -0.83
CLIP1-214ENST00000540539 GPR180Q86V85 440 aa9.85□□□□□ -0.83
CLIP1-214ENST00000540539 TMPRSS6Q8IU80 811 aa9.85□□□□□ -0.83
CLIP1-214ENST00000540539 CLIP4Q8N3C7 705 aa9.85□□□□□ -0.83
CLIP1-214ENST00000540539 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.85□□□□□ -0.83
CLIP1-214ENST00000540539 ADAMTS16Q8TE57 1224 aa9.85□□□□□ -0.83
CLIP1-214ENST00000540539 DENND1AQ8TEH3 1009 aa9.85□□□□□ -0.83
CLIP1-214ENST00000540539 ISOC1Q96CN7 298 aa9.85□□□□□ -0.83
CLIP1-214ENST00000540539 ZNF641Q96N77 438 aaPredicted RBP9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms