RNA–Protein interactions for RNA: ENST00000539843.5

UBE3B-211, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 2

Gene UBE3B, Length 586 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-211ENST00000539843 CSRP2Q16527 193 aa16.31■□□□□ 0.2
UBE3B-211ENST00000539843 BMT2Q1RMZ1 405 aa16.31■□□□□ 0.2
UBE3B-211ENST00000539843 FSTL4Q6MZW2 842 aa16.31■□□□□ 0.2
UBE3B-211ENST00000539843 CACNA2D4Q7Z3S7 1137 aa16.31■□□□□ 0.2
UBE3B-211ENST00000539843 LIMS2Q7Z4I7 341 aa16.31■□□□□ 0.2
UBE3B-211ENST00000539843 DDX42Q86XP3 938 aaKnown RBP eCLIP16.31■□□□□ 0.2
UBE3B-211ENST00000539843 C12orf56Q8IXR9 622 aa16.31■□□□□ 0.2
UBE3B-211ENST00000539843 GAB3Q8WWW8 586 aa16.31■□□□□ 0.2
UBE3B-211ENST00000539843 LOXL4Q96JB6 756 aa16.31■□□□□ 0.2
UBE3B-211ENST00000539843 TNIP3Q96KP6 325 aa16.31■□□□□ 0.2
UBE3B-211ENST00000539843 C8orf48Q96LL4 319 aa16.31■□□□□ 0.2
UBE3B-211ENST00000539843 SLC39A2Q9NP94 309 aa16.31■□□□□ 0.2
UBE3B-211ENST00000539843 CRTAC1Q9NQ79 661 aa16.31■□□□□ 0.2
UBE3B-211ENST00000539843 SEMA4GQ9NTN9 838 aa16.31■□□□□ 0.2
UBE3B-211ENST00000539843 NXF1Q9UBU9 619 aaKnown RBP16.31■□□□□ 0.2
UBE3B-211ENST00000539843 WNT6Q9Y6F9 365 aa16.31■□□□□ 0.2
UBE3B-211ENST00000539843 VPS13AQ96RL7 3174 aa16.3■□□□□ 0.2
UBE3B-211ENST00000539843 TGFB1I1O43294 461 aa16.3■□□□□ 0.2
UBE3B-211ENST00000539843 HCRTO43612 131 aa16.3■□□□□ 0.2
UBE3B-211ENST00000539843 RTN3O95197 1032 aaPredicted RBP16.3■□□□□ 0.2
UBE3B-211ENST00000539843 EGFP01133 1207 aa16.3■□□□□ 0.2
UBE3B-211ENST00000539843 HOXD13P35453 343 aa16.3■□□□□ 0.2
UBE3B-211ENST00000539843 GALK1P51570 392 aa16.3■□□□□ 0.2
UBE3B-211ENST00000539843 ATXN1P54253 815 aaKnown RBP16.3■□□□□ 0.2
UBE3B-211ENST00000539843 NOP14P78316 857 aaKnown RBP16.3■□□□□ 0.2
UBE3B-211ENST00000539843 DMWDQ09019 674 aa16.3■□□□□ 0.2
UBE3B-211ENST00000539843 ZNF699Q32M78 642 aa16.3■□□□□ 0.2
UBE3B-211ENST00000539843 ZNF667Q5HYK9 610 aa16.3■□□□□ 0.2
UBE3B-211ENST00000539843 RESP18Q5W5W9 173 aa16.3■□□□□ 0.2
UBE3B-211ENST00000539843 PRR23CQ6ZRP0 262 aa16.3■□□□□ 0.2
UBE3B-211ENST00000539843 KIAA1958Q8N8K9 716 aa16.3■□□□□ 0.2
UBE3B-211ENST00000539843 C12orf50Q8NA57 414 aaPredicted RBP16.3■□□□□ 0.2
UBE3B-211ENST00000539843 PDZD8Q8NEN9 1154 aa16.3■□□□□ 0.2
UBE3B-211ENST00000539843 CYP2S1Q96SQ9 504 aa16.3■□□□□ 0.2
UBE3B-211ENST00000539843 MRPL45Q9BRJ2 306 aaKnown RBP16.3■□□□□ 0.2
UBE3B-211ENST00000539843 DNAI2Q9GZS0 605 aa16.3■□□□□ 0.2
UBE3B-211ENST00000539843 PCDHA7Q9UN72 937 aa16.3■□□□□ 0.2
UBE3B-211ENST00000539843 MED19A0JLT2 244 aaPredicted RBP16.29■□□□□ 0.2
UBE3B-211ENST00000539843 C2orf78A6NCI8 922 aa16.29■□□□□ 0.2
UBE3B-211ENST00000539843 F8VP50 259 aa16.29■□□□□ 0.2
UBE3B-211ENST00000539843 MYL1P05976 194 aa16.29■□□□□ 0.2
UBE3B-211ENST00000539843 PTPN1P18031 435 aaKnown RBP16.29■□□□□ 0.2
UBE3B-211ENST00000539843 IFRD2Q12894 506 aaPredicted RBP16.29■□□□□ 0.2
UBE3B-211ENST00000539843 SRSF5Q13243 272 aaKnown RBP16.29■□□□□ 0.2
UBE3B-211ENST00000539843 CCDC142Q17RM4 750 aa16.29■□□□□ 0.2
UBE3B-211ENST00000539843 EML3Q32P44 896 aa16.29■□□□□ 0.2
UBE3B-211ENST00000539843 FAM160A2Q8N612 972 aaPredicted RBP16.29■□□□□ 0.2
UBE3B-211ENST00000539843 B3GALNT2Q8NCR0 500 aa16.29■□□□□ 0.2
UBE3B-211ENST00000539843 DDX1Q92499 740 aaKnown RBP16.29■□□□□ 0.2
UBE3B-211ENST00000539843 MED10Q9BTT4 135 aa16.29■□□□□ 0.2
UBE3B-211ENST00000539843 TTLL2Q9BWV7 592 aa16.29■□□□□ 0.2
UBE3B-211ENST00000539843 PARD6AQ9NPB6 346 aa16.29■□□□□ 0.2
UBE3B-211ENST00000539843 GCNT4Q9P109 453 aa16.29■□□□□ 0.2
UBE3B-211ENST00000539843 USP25Q9UHP3 1055 aa16.29■□□□□ 0.2
UBE3B-211ENST00000539843 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.28■□□□□ 0.2
UBE3B-211ENST00000539843 OTOL1A6NHN0 477 aaPredicted RBP16.28■□□□□ 0.2
UBE3B-211ENST00000539843 LEFTY2O00292 366 aa16.28■□□□□ 0.2
UBE3B-211ENST00000539843 AXIN1O15169 862 aa16.28■□□□□ 0.2
UBE3B-211ENST00000539843 APBB3O95704 486 aa16.28■□□□□ 0.2
UBE3B-211ENST00000539843 CST3P01034 146 aaPredicted RBP16.28■□□□□ 0.2
UBE3B-211ENST00000539843 SLFN14P0C7P3 912 aa16.28■□□□□ 0.2
UBE3B-211ENST00000539843 YWHAQP27348 245 aa16.28■□□□□ 0.2
UBE3B-211ENST00000539843 MYL6P60660 151 aa16.28■□□□□ 0.2
UBE3B-211ENST00000539843 EHHADHQ08426 723 aa16.28■□□□□ 0.2
UBE3B-211ENST00000539843 CUL4BQ13620 913 aa16.28■□□□□ 0.2
UBE3B-211ENST00000539843 ELF2Q15723 593 aa16.28■□□□□ 0.2
UBE3B-211ENST00000539843 AASDHQ4L235 1098 aaPredicted RBP16.28■□□□□ 0.2
UBE3B-211ENST00000539843 WDR44Q5JSH3 913 aa16.28■□□□□ 0.2
UBE3B-211ENST00000539843 IL31Q6EBC2 164 aa16.28■□□□□ 0.2
UBE3B-211ENST00000539843 SYT13Q7L8C5 426 aa16.28■□□□□ 0.2
UBE3B-211ENST00000539843 C11orf74Q86VG3 221 aa16.28■□□□□ 0.2
UBE3B-211ENST00000539843 NUP93Q8N1F7 819 aa16.28■□□□□ 0.2
UBE3B-211ENST00000539843 RPLP0P6Q8NHW5 317 aa16.28■□□□□ 0.2
UBE3B-211ENST00000539843 OVCA2Q8WZ82 227 aa16.28■□□□□ 0.2
UBE3B-211ENST00000539843 CCDC34Q96HJ3 373 aa16.28■□□□□ 0.2
UBE3B-211ENST00000539843 SLC22A12Q96S37 553 aa16.28■□□□□ 0.2
UBE3B-211ENST00000539843 FRMD4BQ9Y2L6 1034 aa16.28■□□□□ 0.2
UBE3B-211ENST00000539843 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.28■□□□□ 0.2
UBE3B-211ENST00000539843 CACNA1AO00555 2505 aa16.28■□□□□ 0.2
UBE3B-211ENST00000539843 CEP250Q9BV73 2442 aa16.28■□□□□ 0.2
UBE3B-211ENST00000539843 ZNF840PA6NDX5 716 aa16.27■□□□□ 0.2
UBE3B-211ENST00000539843 RHOBTB1O94844 696 aa16.27■□□□□ 0.2
UBE3B-211ENST00000539843 ADH1CP00326 375 aa16.27■□□□□ 0.2
UBE3B-211ENST00000539843 MBL2P11226 248 aaPredicted RBP16.27■□□□□ 0.2
UBE3B-211ENST00000539843 SLC7A9P82251 487 aa16.27■□□□□ 0.2
UBE3B-211ENST00000539843 NCOA4Q13772 614 aa16.27■□□□□ 0.2
UBE3B-211ENST00000539843 PREPLQ4J6C6 727 aaPredicted RBP16.27■□□□□ 0.2
UBE3B-211ENST00000539843 SCARA3Q6AZY7 606 aa16.27■□□□□ 0.2
UBE3B-211ENST00000539843 TSTD1Q8NFU3 115 aa16.27■□□□□ 0.2
UBE3B-211ENST00000539843 FBXO32Q969P5 355 aa16.27■□□□□ 0.2
UBE3B-211ENST00000539843 CHFRQ96EP1 664 aa16.27■□□□□ 0.2
UBE3B-211ENST00000539843 HHIPQ96QV1 700 aa16.27■□□□□ 0.2
UBE3B-211ENST00000539843 IMPG2Q9BZV3 1241 aa16.27■□□□□ 0.2
UBE3B-211ENST00000539843 NACA2Q9H009 215 aa16.27■□□□□ 0.2
UBE3B-211ENST00000539843 VRTNQ9H8Y1 702 aa16.27■□□□□ 0.2
UBE3B-211ENST00000539843 TBC1D14Q9P2M4 693 aa16.27■□□□□ 0.2
UBE3B-211ENST00000539843 PCDHGA5Q9Y5G8 931 aa16.27■□□□□ 0.2
UBE3B-211ENST00000539843 CPQQ9Y646 472 aa16.27■□□□□ 0.2
UBE3B-211ENST00000539843 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.26■□□□□ 0.19
UBE3B-211ENST00000539843 SLC30A4O14863 429 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms