RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 PPP3CCP48454 512 aa14.51□□□□□ -0.09
SS18-204ENST00000539244 USP46P62068 366 aa14.51□□□□□ -0.09
SS18-204ENST00000539244 NOP14P78316 857 aaKnown RBP14.51□□□□□ -0.09
SS18-204ENST00000539244 SLC7A9P82251 487 aa14.51□□□□□ -0.09
SS18-204ENST00000539244 CREB5Q02930 508 aa14.51□□□□□ -0.09
SS18-204ENST00000539244 RESTQ13127 1097 aa14.51□□□□□ -0.09
SS18-204ENST00000539244 PSMD2Q13200 908 aa14.51□□□□□ -0.09
SS18-204ENST00000539244 PMS2CLQ68D20 193 aa14.51□□□□□ -0.09
SS18-204ENST00000539244 TSTD1Q8NFU3 115 aa14.51□□□□□ -0.09
SS18-204ENST00000539244 CNOT6LQ96LI5 555 aaKnown RBP14.51□□□□□ -0.09
SS18-204ENST00000539244 EDEM2Q9BV94 578 aa14.51□□□□□ -0.09
SS18-204ENST00000539244 UPF2Q9HAU5 1272 aaKnown RBP14.51□□□□□ -0.09
SS18-204ENST00000539244 EHD2Q9NZN4 543 aa14.51□□□□□ -0.09
SS18-204ENST00000539244 THADAQ6YHU6 1953 aa14.51□□□□□ -0.09
SS18-204ENST00000539244 ZNF233A6NK53 670 aa14.5□□□□□ -0.09
SS18-204ENST00000539244 LEFTY2O00292 366 aa14.5□□□□□ -0.09
SS18-204ENST00000539244 TRIM66O15016 1216 aa14.5□□□□□ -0.09
SS18-204ENST00000539244 TNNC2P02585 160 aa14.5□□□□□ -0.09
SS18-204ENST00000539244 FAM163BP0C2L3 166 aa14.5□□□□□ -0.09
SS18-204ENST00000539244 BDNFP23560 247 aa14.5□□□□□ -0.09
SS18-204ENST00000539244 GRIK1P39086 918 aa14.5□□□□□ -0.09
SS18-204ENST00000539244 STAT6P42226 847 aa14.5□□□□□ -0.09
SS18-204ENST00000539244 DGKEP52429 567 aa14.5□□□□□ -0.09
SS18-204ENST00000539244 PSMC1P62191 440 aaKnown RBP14.5□□□□□ -0.09
SS18-204ENST00000539244 DUOXA2Q1HG44 320 aa14.5□□□□□ -0.09
SS18-204ENST00000539244 USP39Q53GS9 565 aaKnown RBP14.5□□□□□ -0.09
SS18-204ENST00000539244 LMBRD2Q68DH5 695 aaPredicted RBP14.5□□□□□ -0.09
SS18-204ENST00000539244 CBWD2Q8IUF1 395 aa14.5□□□□□ -0.09
SS18-204ENST00000539244 WDR49Q8IV35 697 aa14.5□□□□□ -0.09
SS18-204ENST00000539244 CCDC65Q8IXS2 484 aa14.5□□□□□ -0.09
SS18-204ENST00000539244 MYCBPAPQ8TBZ2 947 aa14.5□□□□□ -0.09
SS18-204ENST00000539244 PCED1BQ96HM7 432 aa14.5□□□□□ -0.09
SS18-204ENST00000539244 KIAA1586Q9HCI6 787 aa14.5□□□□□ -0.09
SS18-204ENST00000539244 TRPM5Q9NZQ8 1165 aa14.5□□□□□ -0.09
SS18-204ENST00000539244 MMP17Q9ULZ9 603 aa14.5□□□□□ -0.09
SS18-204ENST00000539244 R3HCC1Q9Y3T6 440 aaKnown RBP14.5□□□□□ -0.09
SS18-204ENST00000539244 LNP1A1A4G5 178 aa14.49□□□□□ -0.09
SS18-204ENST00000539244 ZNF840PA6NDX5 716 aa14.49□□□□□ -0.09
SS18-204ENST00000539244 TULP1O00294 542 aaPredicted RBP14.49□□□□□ -0.09
SS18-204ENST00000539244 TACC1O75410 805 aa14.49□□□□□ -0.09
SS18-204ENST00000539244 OAS1P00973 400 aaKnown RBP14.49□□□□□ -0.09
SS18-204ENST00000539244 CYP17A1P05093 508 aa14.49□□□□□ -0.09
SS18-204ENST00000539244 CHRM1P11229 460 aaPredicted RBP14.49□□□□□ -0.09
SS18-204ENST00000539244 EIF2DP41214 584 aaKnown RBP14.49□□□□□ -0.09
SS18-204ENST00000539244 MRPS21P82921 87 aaKnown RBP14.49□□□□□ -0.09
SS18-204ENST00000539244 SLC39A14Q15043 492 aa14.49□□□□□ -0.09
SS18-204ENST00000539244 CRY1Q16526 586 aa14.49□□□□□ -0.09
SS18-204ENST00000539244 FAM173BQ6P4H8 233 aa14.49□□□□□ -0.09
SS18-204ENST00000539244 STXBP4Q6ZWJ1 553 aa14.49□□□□□ -0.09
SS18-204ENST00000539244 ADGRG2Q8IZP9 1017 aa14.49□□□□□ -0.09
SS18-204ENST00000539244 TTC16Q8NEE8 873 aa14.49□□□□□ -0.09
SS18-204ENST00000539244 NOC3LQ8WTT2 800 aaKnown RBP14.49□□□□□ -0.09
SS18-204ENST00000539244 C8orf48Q96LL4 319 aa14.49□□□□□ -0.09
SS18-204ENST00000539244 RNF38Q9H0F5 515 aa14.49□□□□□ -0.09
SS18-204ENST00000539244 TNMDQ9H2S6 317 aa14.49□□□□□ -0.09
SS18-204ENST00000539244 PLXND1Q9Y4D7 1925 aa14.49□□□□□ -0.09
SS18-204ENST00000539244 A0A0A0MRY4 1105 aa14.48□□□□□ -0.09
SS18-204ENST00000539244 C4orf47A7E2U8 309 aa14.48□□□□□ -0.09
SS18-204ENST00000539244 SLC9A3R1O14745 358 aaPredicted RBP14.48□□□□□ -0.09
SS18-204ENST00000539244 EIF3DO15371 548 aaKnown RBP eCLIP14.48□□□□□ -0.09
SS18-204ENST00000539244 PDGFRBP09619 1106 aa14.48□□□□□ -0.09
SS18-204ENST00000539244 ANXA13P27216 316 aa14.48□□□□□ -0.09
SS18-204ENST00000539244 GBP1P32455 592 aa14.48□□□□□ -0.09
SS18-204ENST00000539244 HOXD13P35453 343 aa14.48□□□□□ -0.09
SS18-204ENST00000539244 CYP27A1Q02318 531 aa14.48□□□□□ -0.09
SS18-204ENST00000539244 HSF5Q4G112 596 aaPredicted RBP14.48□□□□□ -0.09
SS18-204ENST00000539244 C2orf27AQ580R0 203 aa14.48□□□□□ -0.09
SS18-204ENST00000539244 DAB2IPQ5VWQ8 1189 aa14.48□□□□□ -0.09
SS18-204ENST00000539244 PSAPL1Q6NUJ1 521 aa14.48□□□□□ -0.09
SS18-204ENST00000539244 TRAPPC11Q7Z392 1133 aa14.48□□□□□ -0.09
SS18-204ENST00000539244 FILIP1Q7Z7B0 1213 aa14.48□□□□□ -0.09
SS18-204ENST00000539244 GLIS3Q8NEA6 775 aa14.48□□□□□ -0.09
SS18-204ENST00000539244 MDGA1Q8NFP4 955 aa14.48□□□□□ -0.09
SS18-204ENST00000539244 OLIG1Q8TAK6 271 aa14.48□□□□□ -0.09
SS18-204ENST00000539244 USP28Q96RU2 1077 aa14.48□□□□□ -0.09
SS18-204ENST00000539244 TPSD1Q9BZJ3 242 aa14.48□□□□□ -0.09
SS18-204ENST00000539244 HSPBP1Q9NZL4 362 aa14.48□□□□□ -0.09
SS18-204ENST00000539244 NME7Q9Y5B8 376 aa14.48□□□□□ -0.09
SS18-204ENST00000539244 MYOFQ9NZM1 2061 aa14.48□□□□□ -0.09
SS18-204ENST00000539244 FRYQ5TBA9 3013 aa14.47□□□□□ -0.09
SS18-204ENST00000539244 ANTXRLA6NF34 631 aa14.47□□□□□ -0.09
SS18-204ENST00000539244 F8VP50 259 aa14.47□□□□□ -0.09
SS18-204ENST00000539244 KHNYNO15037 678 aaKnown RBP14.47□□□□□ -0.09
SS18-204ENST00000539244 SYT1P21579 422 aa14.47□□□□□ -0.09
SS18-204ENST00000539244 BCKDHBP21953 392 aa14.47□□□□□ -0.09
SS18-204ENST00000539244 NOVA1P51513 510 aaKnown RBP14.47□□□□□ -0.09
SS18-204ENST00000539244 CEBPZQ03701 1054 aaKnown RBP14.47□□□□□ -0.09
SS18-204ENST00000539244 DHCR24Q15392 516 aa14.47□□□□□ -0.09
SS18-204ENST00000539244 ANO7Q6IWH7 933 aa14.47□□□□□ -0.09
SS18-204ENST00000539244 EPM2AIP1Q7L775 607 aaPredicted RBP14.47□□□□□ -0.09
SS18-204ENST00000539244 MMS19Q96T76 1030 aa14.47□□□□□ -0.09
SS18-204ENST00000539244 MRPL45Q9BRJ2 306 aaKnown RBP14.47□□□□□ -0.09
SS18-204ENST00000539244 PANK2Q9BZ23 570 aa14.47□□□□□ -0.09
SS18-204ENST00000539244 LRRC27Q9C0I9 530 aa14.47□□□□□ -0.09
SS18-204ENST00000539244 ELOVL4Q9GZR5 314 aa14.47□□□□□ -0.09
SS18-204ENST00000539244 TMEM30AQ9NV96 361 aa14.47□□□□□ -0.09
SS18-204ENST00000539244 KBTBD4Q9NVX7 518 aa14.47□□□□□ -0.09
SS18-204ENST00000539244 EVLQ9UI08 416 aaPredicted RBP14.47□□□□□ -0.09
SS18-204ENST00000539244 WASF3Q9UPY6 502 aa14.47□□□□□ -0.09
SS18-204ENST00000539244 CPQQ9Y646 472 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms