RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 SEMA4AQ9H3S1 761 aa12.3□□□□□ -0.44
RTN3-209ENST00000538995 CYP3A43Q9HB55 503 aa12.3□□□□□ -0.44
RTN3-209ENST00000538995 FBXO4Q9UKT5 387 aa12.3□□□□□ -0.44
RTN3-209ENST00000538995 USP34Q70CQ2 3546 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 COL4A3Q01955 1670 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 DMDP11532 3685 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 SPECC1L-ADORA2AF8WAN1 911 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 PSMA7O14818 248 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 LAMTOR5O43504 91 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 RTN3O95197 1032 aaPredicted RBP12.29□□□□□ -0.44
RTN3-209ENST00000538995 CKMP06732 381 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 CTHP32929 405 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 RAP1GAPP47736 663 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 MXI1P50539 228 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 KPNA1P52294 538 aaPredicted RBP12.29□□□□□ -0.44
RTN3-209ENST00000538995 FKBP3Q00688 224 aaKnown RBP12.29□□□□□ -0.44
RTN3-209ENST00000538995 USP4Q13107 963 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 FZD5Q13467 585 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 STIM1Q13586 685 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 LRRC32Q14392 662 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 PDGFRLQ15198 375 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 ITPRIPL2Q3MIP1 535 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 KRT39Q6A163 491 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 FOXR2Q6PJQ5 311 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 ADSSL1Q8N142 457 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 CRYBG2Q8N1P7 616 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 KIAA1958Q8N8K9 716 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 TAS1R2Q8TE23 839 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 OVCA2Q8WZ82 227 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 SMARCD1Q96GM5 515 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 SLITRK1Q96PX8 696 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 FAM83CQ9BQN1 747 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 DNAI2Q9GZS0 605 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 SMG9Q9H0W8 520 aaKnown RBP12.29□□□□□ -0.44
RTN3-209ENST00000538995 FAM124BQ9H5Z6 455 aaPredicted RBP12.29□□□□□ -0.44
RTN3-209ENST00000538995 TRPC7Q9HCX4 862 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 DMAP1Q9NPF5 467 aaPredicted RBP12.29□□□□□ -0.44
RTN3-209ENST00000538995 SPATA6Q9NWH7 488 aaPredicted RBP12.29□□□□□ -0.44
RTN3-209ENST00000538995 TRPM5Q9NZQ8 1165 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 GCNT4Q9P109 453 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 NDRG2Q9UN36 371 aaKnown RBP12.29□□□□□ -0.44
RTN3-209ENST00000538995 ARHGAP26Q9UNA1 814 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 CCL26Q9Y258 94 aa12.29□□□□□ -0.44
RTN3-209ENST00000538995 VPS13AQ96RL7 3174 aa12.28□□□□□ -0.44
RTN3-209ENST00000538995 KIF26AQ9ULI4 1882 aaPredicted RBP12.28□□□□□ -0.44
RTN3-209ENST00000538995 GFRA3O60609 400 aa12.28□□□□□ -0.44
RTN3-209ENST00000538995 SP9P0CG40 484 aa12.28□□□□□ -0.44
RTN3-209ENST00000538995 CCNE1P24864 410 aa12.28□□□□□ -0.44
RTN3-209ENST00000538995 NDST1P52848 882 aa12.28□□□□□ -0.44
RTN3-209ENST00000538995 USP46P62068 366 aa12.28□□□□□ -0.44
RTN3-209ENST00000538995 MTF1Q14872 753 aa12.28□□□□□ -0.44
RTN3-209ENST00000538995 ZNF77Q15935 545 aa12.28□□□□□ -0.44
RTN3-209ENST00000538995 SPOPLQ6IQ16 392 aa12.28□□□□□ -0.44
RTN3-209ENST00000538995 CC2D1AQ6P1N0 951 aaPredicted RBP12.28□□□□□ -0.44
RTN3-209ENST00000538995 FRMD5Q7Z6J6 570 aa12.28□□□□□ -0.44
RTN3-209ENST00000538995 GPIHBP1Q8IV16 184 aa12.28□□□□□ -0.44
RTN3-209ENST00000538995 MAML2Q8IZL2 1156 aaPredicted RBP12.28□□□□□ -0.44
RTN3-209ENST00000538995 NUP93Q8N1F7 819 aa12.28□□□□□ -0.44
RTN3-209ENST00000538995 TTC39CQ8N584 583 aa12.28□□□□□ -0.44
RTN3-209ENST00000538995 PDZD8Q8NEN9 1154 aa12.28□□□□□ -0.44
RTN3-209ENST00000538995 NKD2Q969F2 451 aaPredicted RBP12.28□□□□□ -0.44
RTN3-209ENST00000538995 ZFYVE19Q96K21 471 aa12.28□□□□□ -0.44
RTN3-209ENST00000538995 APOBEC3GQ9HC16 384 aaKnown RBP12.28□□□□□ -0.44
RTN3-209ENST00000538995 PRMT8Q9NR22 394 aaPredicted RBP12.28□□□□□ -0.44
RTN3-209ENST00000538995 TMEM30AQ9NV96 361 aa12.28□□□□□ -0.44
RTN3-209ENST00000538995 COMMD8Q9NX08 183 aa12.28□□□□□ -0.44
RTN3-209ENST00000538995 GTSE1Q9NYZ3 720 aa12.28□□□□□ -0.44
RTN3-209ENST00000538995 PTPRDP23468 1912 aa12.27□□□□□ -0.44
RTN3-209ENST00000538995 MIA3Q5JRA6 1907 aa12.27□□□□□ -0.44
RTN3-209ENST00000538995 RIF1Q5UIP0 2472 aaKnown RBP12.27□□□□□ -0.45
RTN3-209ENST00000538995 C2orf78A6NCI8 922 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 ZNF840PA6NDX5 716 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 PRR23AA6NEV1 266 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 CLDN5O00501 218 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 OLFM2O95897 454 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 CHRNB1P11230 501 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 HDCP19113 662 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 CACNA2D1P54289 1103 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 SLC7A9P82251 487 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 AMPD2Q01433 879 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 TNK2Q07912 1038 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 RUNX3Q13761 415 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 PPP2R5DQ14738 602 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 DGKKQ5KSL6 1271 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 PAQR9Q6ZVX9 377 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 ACOT1Q86TX2 421 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 FUKQ8N0W3 1084 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 FBXL13Q8NEE6 735 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 OSCP1Q8WVF1 389 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 DHTKD1Q96HY7 919 aaPredicted RBP12.27□□□□□ -0.45
RTN3-209ENST00000538995 MED10Q9BTT4 135 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 NT5C1AQ9BXI3 368 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 FAM126AQ9BYI3 521 aaPredicted RBP12.27□□□□□ -0.45
RTN3-209ENST00000538995 CSNK1G1Q9HCP0 422 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 HPS4Q9NQG7 708 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 GKN1Q9NS71 199 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 KRT82Q9NSB4 513 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 IL37Q9NZH6 218 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 HMGXB4Q9UGU5 601 aa12.27□□□□□ -0.45
RTN3-209ENST00000538995 MAN1B1Q9UKM7 699 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms