RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 RGS2P41220 211 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 VPS41P49754 854 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 PSEN2P49810 448 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 SLC8A3P57103 927 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 OTUD4Q01804 1114 aaKnown RBP6.95□□□□□ -1.3
USP28-206ENST00000538224 PLCB3Q01970 1234 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 ROR1Q01973 937 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 GPS1Q13098 491 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 MFSD10Q14728 455 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 TRIP13Q15645 432 aaPredicted RBP6.95□□□□□ -1.3
USP28-206ENST00000538224 ZBTB6Q15916 424 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 GPR162Q16538 588 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 HIF1AQ16665 826 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 KIZQ2M2Z5 673 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 GOLGA7BQ2TAP0 167 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 BOLA3Q53S33 107 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 FBXO47Q5MNV8 452 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 MORN1Q5T089 497 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 TMEM63BQ5T3F8 832 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 RNASEH2BQ5TBB1 312 aaKnown RBP6.95□□□□□ -1.3
USP28-206ENST00000538224 DAB2IPQ5VWQ8 1189 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 OLFML2BQ68BL8 750 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 OR6B2Q6IFH4 312 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 ARHGEF18Q6ZSZ5 1173 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 ANKS1BQ7Z6G8 1248 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 CPLX4Q7Z7G2 160 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 TADA2BQ86TJ2 420 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 TLK2Q86UE8 772 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 RFX6Q8HWS3 928 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 OTUD6BQ8N6M0 293 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 ATP11CQ8NB49 1132 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 JOSD2Q8TAC2 188 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 TRAF3IP1Q8TDR0 691 aaPredicted RBP6.95□□□□□ -1.3
USP28-206ENST00000538224 DYDC1Q8WWB3 177 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 ARHGEF2Q92974 986 aaKnown RBP6.95□□□□□ -1.3
USP28-206ENST00000538224 SGSM3Q96HU1 749 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 TNIP3Q96KP6 325 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 TWNKQ96RR1 684 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 MAK16Q9BXY0 300 aaKnown RBP6.95□□□□□ -1.3
USP28-206ENST00000538224 AP5M1Q9H0R1 490 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 ZWILCHQ9H900 591 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 NKIRAS1Q9NYS0 192 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 SAMD15Q9P1V8 674 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 HMGXB4Q9UGU5 601 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 SLC24A2Q9UI40 661 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 CYTH4Q9UIA0 394 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 USP18Q9UMW8 372 aa6.95□□□□□ -1.3
USP28-206ENST00000538224 EXOC1LA0A1B0GW35 172 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 DCDC2CA8MYV0 355 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 E5RJQ4 531 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 M0QZ92 97 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 HAS3O00219 553 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 ALOX15BO15296 676 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 DYNC1LI2O43237 492 aaPredicted RBP6.94□□□□□ -1.3
USP28-206ENST00000538224 RECQL4O94761 1208 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 ENDOD1O94919 500 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 CELF2O95319 508 aaKnown RBP6.94□□□□□ -1.3
USP28-206ENST00000538224 PDGFRAP16234 1089 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 PECAM1P16284 738 aaPredicted RBP6.94□□□□□ -1.3
USP28-206ENST00000538224 PTPN9P43378 593 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 TAF6P49848 677 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 CRYBB1P53674 252 aaPredicted RBP6.94□□□□□ -1.3
USP28-206ENST00000538224 SLC18A1P54219 525 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 CDH6P55285 790 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 EIF3EP60228 445 aaKnown RBP6.94□□□□□ -1.3
USP28-206ENST00000538224 SLC6A3Q01959 620 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 BST2Q10589 180 aaKnown RBP6.94□□□□□ -1.3
USP28-206ENST00000538224 CBLBQ13191 982 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 KRT81Q14533 505 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 ITIH4Q14624 930 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 NOMO1Q15155 1222 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 LLGL1Q15334 1064 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 KYNUQ16719 465 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 LONRF1Q17RB8 773 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 SKIDA1Q1XH10 827 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 KLHL38Q2WGJ6 581 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 ATP13A4Q4VNC1 1196 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 PKDCCQ504Y2 493 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 C9orf57Q5W0N0 161 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 MAP1SQ66K74 1059 aaPredicted RBP6.94□□□□□ -1.3
USP28-206ENST00000538224 TAF2Q6P1X5 1199 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 FOXR1Q6PIV2 292 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 CCDC121Q6ZUS5 278 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 FAM183BPQ6ZVS7 135 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 DPH6Q7L8W6 267 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 TMEM110Q86TL2 294 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 RSPH3Q86UC2 560 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 CCDC197Q8NCU1 140 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 NPLOC4Q8TAT6 608 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 ACTL9Q8TC94 416 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 ATXN2LQ8WWM7 1075 aaKnown RBP6.94□□□□□ -1.3
USP28-206ENST00000538224 HSPH1Q92598 858 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 PRCCQ92733 491 aaPredicted RBP6.94□□□□□ -1.3
USP28-206ENST00000538224 ZBTB10Q96DT7 871 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 CABS1Q96KC9 395 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 HSFY1Q96LI6 401 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 PPP1R16BQ96T49 567 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 APBA2Q99767 749 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 ZNF670Q9BS34 389 aa6.94□□□□□ -1.3
USP28-206ENST00000538224 DDX23Q9BUQ8 820 aaKnown RBP6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms