RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 FAM81BQ96LP2 452 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 THAP2Q9H0W7 228 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 SFXN1Q9H9B4 322 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 OSGEPQ9NPF4 335 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.66□□□□□ -0.38
CLIP1-208ENST00000537004 SMARCAL1Q9NZC9 954 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 TIMM13Q9Y5L4 95 aaPredicted RBP12.66□□□□□ -0.38
CLIP1-208ENST00000537004 CDY1Q9Y6F8 540 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 TRAPPC3O43617 180 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 TUBBP07437 444 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 RPL9P32969 192 aaKnown RBP12.66□□□□□ -0.38
CLIP1-208ENST00000537004 PDE6CP51160 858 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 VSNL1P62760 191 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 CFAP221Q4G0U5 840 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 ATAT1Q5SQI0 421 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 DAAM2Q86T65 1068 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 BRSK2Q8IWQ3 736 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 SYCE1Q8N0S2 351 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 MMGT1Q8N4V1 131 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 KREMEN2Q8NCW0 462 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 TAF4BQ92750 862 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 ARHGEF26Q96DR7 871 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 MS4A14Q96JA4 679 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 PCDHB18PQ96TA0 734 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 ISCUQ9H1K1 167 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 RNF14Q9UBS8 474 aa12.66□□□□□ -0.38
CLIP1-208ENST00000537004 UBQLN1Q9UMX0 589 aaKnown RBP12.66□□□□□ -0.38
CLIP1-208ENST00000537004 TARSL2A2RTX5 802 aaKnown RBP12.65□□□□□ -0.38
CLIP1-208ENST00000537004 RTN2O75298 545 aa12.65□□□□□ -0.38
CLIP1-208ENST00000537004 FTLP02792 175 aaPredicted RBP12.65□□□□□ -0.38
CLIP1-208ENST00000537004 MMEP08473 750 aa12.65□□□□□ -0.38
CLIP1-208ENST00000537004 GZMAP12544 262 aa12.65□□□□□ -0.38
CLIP1-208ENST00000537004 KRT5P13647 590 aa12.65□□□□□ -0.38
CLIP1-208ENST00000537004 LRPAP1P30533 357 aa12.65□□□□□ -0.38
CLIP1-208ENST00000537004 FMO1Q01740 532 aa12.65□□□□□ -0.38
CLIP1-208ENST00000537004 CDR2Q01850 454 aa12.65□□□□□ -0.38
CLIP1-208ENST00000537004 KYAT1Q16773 422 aa12.65□□□□□ -0.38
CLIP1-208ENST00000537004 VARS2Q5ST30 1063 aaKnown RBP12.65□□□□□ -0.38
CLIP1-208ENST00000537004 WDR93Q6P2C0 686 aa12.65□□□□□ -0.38
CLIP1-208ENST00000537004 PEX26Q7Z412 305 aa12.65□□□□□ -0.38
CLIP1-208ENST00000537004 GPR149Q86SP6 731 aa12.65□□□□□ -0.38
CLIP1-208ENST00000537004 EFCAB13Q8IY85 973 aa12.65□□□□□ -0.38
CLIP1-208ENST00000537004 OR5B17Q8NGF7 314 aa12.65□□□□□ -0.38
CLIP1-208ENST00000537004 HNRNPLLQ8WVV9 542 aaKnown RBP12.65□□□□□ -0.38
CLIP1-208ENST00000537004 OGFRQ9NZT2 677 aa12.65□□□□□ -0.38
CLIP1-208ENST00000537004 MTRRQ9UBK8 725 aa12.65□□□□□ -0.38
CLIP1-208ENST00000537004 VWA8A3KMH1 1905 aa12.64□□□□□ -0.39
CLIP1-208ENST00000537004 C2CD4DB7Z1M9 353 aa12.64□□□□□ -0.39
CLIP1-208ENST00000537004 SPTLC1O15269 473 aa12.64□□□□□ -0.39
CLIP1-208ENST00000537004 BUB1BO60566 1050 aaPredicted RBP12.64□□□□□ -0.39
CLIP1-208ENST00000537004 ERLIN1O75477 346 aa12.64□□□□□ -0.39
CLIP1-208ENST00000537004 CDR1P51861 262 aa12.64□□□□□ -0.39
CLIP1-208ENST00000537004 ARPP19P56211 112 aa12.64□□□□□ -0.39
CLIP1-208ENST00000537004 TMEM132DQ14C87 1099 aa12.64□□□□□ -0.39
CLIP1-208ENST00000537004 SPOPLQ6IQ16 392 aa12.64□□□□□ -0.39
CLIP1-208ENST00000537004 GPR65Q8IYL9 337 aa12.64□□□□□ -0.39
CLIP1-208ENST00000537004 ZNF707Q96C28 371 aaPredicted RBP12.64□□□□□ -0.39
CLIP1-208ENST00000537004 SUSD3Q96L08 255 aa12.64□□□□□ -0.39
CLIP1-208ENST00000537004 RIPOR3Q96MK2 946 aa12.64□□□□□ -0.39
CLIP1-208ENST00000537004 C11orf16Q9NQ32 467 aa12.64□□□□□ -0.39
CLIP1-208ENST00000537004 PI4K2BG5E9Z4 385 aa12.64□□□□□ -0.39
CLIP1-208ENST00000537004 CES2O00748 559 aa12.64□□□□□ -0.39
CLIP1-208ENST00000537004 KCNK3O14649 394 aa12.64□□□□□ -0.39
CLIP1-208ENST00000537004 LONRF2Q1L5Z9 754 aa12.64□□□□□ -0.39
CLIP1-208ENST00000537004 NT5DC3Q86UY8 548 aa12.64□□□□□ -0.39
CLIP1-208ENST00000537004 WDR49Q8IV35 697 aa12.64□□□□□ -0.39
CLIP1-208ENST00000537004 RHOT2Q8IXI1 618 aa12.64□□□□□ -0.39
CLIP1-208ENST00000537004 DDX1Q92499 740 aaKnown RBP12.64□□□□□ -0.39
CLIP1-208ENST00000537004 ATP8B1O43520 1251 aa12.63□□□□□ -0.39
CLIP1-208ENST00000537004 DCXO43602 365 aa12.63□□□□□ -0.39
CLIP1-208ENST00000537004 PHACTR2O75167 634 aa12.63□□□□□ -0.39
CLIP1-208ENST00000537004 CYP3A5P20815 502 aa12.63□□□□□ -0.39
CLIP1-208ENST00000537004 MCM3P25205 808 aa12.63□□□□□ -0.39
CLIP1-208ENST00000537004 MTHFRP42898 656 aa12.63□□□□□ -0.39
CLIP1-208ENST00000537004 AP3M2P53677 418 aa12.63□□□□□ -0.39
CLIP1-208ENST00000537004 LILRA4P59901 499 aa12.63□□□□□ -0.39
CLIP1-208ENST00000537004 GPC5P78333 572 aa12.63□□□□□ -0.39
CLIP1-208ENST00000537004 CBX1P83916 185 aa12.63□□□□□ -0.39
CLIP1-208ENST00000537004 CREMQ03060 361 aa12.63□□□□□ -0.39
CLIP1-208ENST00000537004 C9orf57Q5W0N0 161 aa12.63□□□□□ -0.39
CLIP1-208ENST00000537004 CCDC70Q6NSX1 233 aa12.63□□□□□ -0.39
CLIP1-208ENST00000537004 ANKS3Q6ZW76 656 aa12.63□□□□□ -0.39
CLIP1-208ENST00000537004 ST13P5Q8NFI4 369 aaPredicted RBP12.63□□□□□ -0.39
CLIP1-208ENST00000537004 BEST2Q8NFU1 509 aa12.63□□□□□ -0.39
CLIP1-208ENST00000537004 SMG7Q92540 1137 aaKnown RBP12.63□□□□□ -0.39
CLIP1-208ENST00000537004 PBKQ96KB5 322 aa12.63□□□□□ -0.39
CLIP1-208ENST00000537004 NECTIN4Q96NY8 510 aa12.63□□□□□ -0.39
CLIP1-208ENST00000537004 PLEKHA4Q9H4M7 779 aa12.63□□□□□ -0.39
CLIP1-208ENST00000537004 ASB7Q9H672 318 aa12.63□□□□□ -0.39
CLIP1-208ENST00000537004 APOBEC3GQ9HC16 384 aaKnown RBP12.63□□□□□ -0.39
CLIP1-208ENST00000537004 ABCB6Q9NP58 842 aa12.63□□□□□ -0.39
CLIP1-208ENST00000537004 RBM12Q9NTZ6 932 aaKnown RBP12.63□□□□□ -0.39
CLIP1-208ENST00000537004 FAM53CQ9NYF3 392 aa12.63□□□□□ -0.39
CLIP1-208ENST00000537004 FBXW11Q9UKB1 542 aa12.63□□□□□ -0.39
CLIP1-208ENST00000537004 PLXNA3P51805 1871 aa12.63□□□□□ -0.39
CLIP1-208ENST00000537004 TBC1D4O60343 1298 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 C8AP07357 584 aa12.62□□□□□ -0.39
CLIP1-208ENST00000537004 HADHBP55084 474 aaKnown RBP12.62□□□□□ -0.39
CLIP1-208ENST00000537004 NOP14P78316 857 aaKnown RBP12.62□□□□□ -0.39
CLIP1-208ENST00000537004 TFAMQ00059 246 aaKnown RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms