RNA–Protein interactions for RNA: ENST00000535313.1

CLSTN3-204, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 787 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-204ENST00000535313 HPSEQ9Y251 543 aa17.25■□□□□ 0.35
CLSTN3-204ENST00000535313 CEP250Q9BV73 2442 aa17.25■□□□□ 0.35
CLSTN3-204ENST00000535313 DMXL1Q9Y485 3027 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 OTOL1A6NHN0 477 aaPredicted RBP17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 LRRIQ3A6PVS8 624 aaPredicted RBP17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 CHURC1-FNTBB4DL54 471 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 PDXKO00764 312 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 TRDMT1O14717 391 aaKnown RBP17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 CALUO43852 315 aaPredicted RBP17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 KIF20AO95235 890 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 NR3C1P04150 777 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 RPN1P04843 607 aaKnown RBP17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 PFKLP17858 780 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 PPP3CCP48454 512 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 FNTBP49356 437 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 USP46P62068 366 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 NOP14P78316 857 aaKnown RBP17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 CLDN10P78369 228 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 USP4Q13107 963 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 NCOA4Q13772 614 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 TMEM196Q5HYL7 178 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 ERMP1Q7Z2K6 904 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 LONP2Q86WA8 852 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 B3GALNT2Q8NCR0 500 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 PLEKHO2Q8TD55 490 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 SH3RF2Q8TEC5 729 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 TMEM174Q8WUU8 243 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 ATP2A3Q93084 1043 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 TTLL2Q9BWV7 592 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 SCAND2PQ9GZW5 306 aaPredicted RBP17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 KCTD10Q9H3F6 313 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 DPEP3Q9H4B8 488 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 SMYD3Q9H7B4 428 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 ECT2Q9H8V3 914 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 ARHGAP26Q9UNA1 814 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 FRMD4BQ9Y2L6 1034 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 ZDHHC9Q9Y397 364 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 NME7Q9Y5B8 376 aa17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 KIF26AQ9ULI4 1882 aaPredicted RBP17.24■□□□□ 0.35
CLSTN3-204ENST00000535313 ATP8B3O60423 1300 aa17.23■□□□□ 0.35
CLSTN3-204ENST00000535313 K7ESF4 209 aa17.23■□□□□ 0.35
CLSTN3-204ENST00000535313 ATG13O75143 517 aa17.23■□□□□ 0.35
CLSTN3-204ENST00000535313 C4BPAP04003 597 aaKnown RBP17.23■□□□□ 0.35
CLSTN3-204ENST00000535313 P4HA1P13674 534 aa17.23■□□□□ 0.35
CLSTN3-204ENST00000535313 CNR2P34972 360 aa17.23■□□□□ 0.35
CLSTN3-204ENST00000535313 NDUFA8P51970 172 aa17.23■□□□□ 0.35
CLSTN3-204ENST00000535313 NR1H3Q13133 447 aa17.23■□□□□ 0.35
CLSTN3-204ENST00000535313 CEP135Q66GS9 1140 aa17.23■□□□□ 0.35
CLSTN3-204ENST00000535313 HEATR6Q6AI08 1181 aaKnown RBP17.23■□□□□ 0.35
CLSTN3-204ENST00000535313 FSTL4Q6MZW2 842 aa17.23■□□□□ 0.35
CLSTN3-204ENST00000535313 PRR23BQ6ZRT6 265 aa17.23■□□□□ 0.35
CLSTN3-204ENST00000535313 RMDN1Q96DB5 314 aa17.23■□□□□ 0.35
CLSTN3-204ENST00000535313 CHAMP1Q96JM3 812 aa17.23■□□□□ 0.35
CLSTN3-204ENST00000535313 SLITRK1Q96PX8 696 aa17.23■□□□□ 0.35
CLSTN3-204ENST00000535313 P2RY13Q9BPV8 354 aa17.23■□□□□ 0.35
CLSTN3-204ENST00000535313 B3GNT5Q9BYG0 378 aa17.23■□□□□ 0.35
CLSTN3-204ENST00000535313 ZNF518BQ9C0D4 1074 aa17.23■□□□□ 0.35
CLSTN3-204ENST00000535313 WNT6Q9Y6F9 365 aa17.23■□□□□ 0.35
CLSTN3-204ENST00000535313 DCHS1Q96JQ0 3298 aa17.22■□□□□ 0.35
CLSTN3-204ENST00000535313 ZNF840PA6NDX5 716 aa17.22■□□□□ 0.35
CLSTN3-204ENST00000535313 ABL1P00519 1130 aa17.22■□□□□ 0.35
CLSTN3-204ENST00000535313 TCF3P15923 654 aa17.22■□□□□ 0.35
CLSTN3-204ENST00000535313 DRD1P21728 446 aa17.22■□□□□ 0.35
CLSTN3-204ENST00000535313 HOXA6P31267 233 aa17.22■□□□□ 0.35
CLSTN3-204ENST00000535313 GJA4P35212 333 aa17.22■□□□□ 0.35
CLSTN3-204ENST00000535313 CDH8P55286 799 aa17.22■□□□□ 0.35
CLSTN3-204ENST00000535313 DMWDQ09019 674 aa17.22■□□□□ 0.35
CLSTN3-204ENST00000535313 SIM2Q14190 667 aaPredicted RBP17.22■□□□□ 0.35
CLSTN3-204ENST00000535313 LPAL2Q16609 132 aa17.22■□□□□ 0.35
CLSTN3-204ENST00000535313 SGSM1Q2NKQ1 1148 aa17.22■□□□□ 0.35
CLSTN3-204ENST00000535313 LAIR1Q6GTX8 287 aa17.22■□□□□ 0.35
CLSTN3-204ENST00000535313 SCARA5Q6ZMJ2 495 aa17.22■□□□□ 0.35
CLSTN3-204ENST00000535313 TMC2Q8TDI7 906 aa17.22■□□□□ 0.35
CLSTN3-204ENST00000535313 TNIP3Q96KP6 325 aa17.22■□□□□ 0.35
CLSTN3-204ENST00000535313 MED10Q9BTT4 135 aa17.22■□□□□ 0.35
CLSTN3-204ENST00000535313 C2orf42Q9NWW7 574 aa17.22■□□□□ 0.35
CLSTN3-204ENST00000535313 PTPRDP23468 1912 aa17.21■□□□□ 0.35
CLSTN3-204ENST00000535313 GREB1Q4ZG55 1949 aa17.21■□□□□ 0.35
CLSTN3-204ENST00000535313 FAM237AA0A1B0GTK4 181 aa17.21■□□□□ 0.35
CLSTN3-204ENST00000535313 CLDN5O00501 218 aa17.21■□□□□ 0.35
CLSTN3-204ENST00000535313 EGFP01133 1207 aa17.21■□□□□ 0.35
CLSTN3-204ENST00000535313 RAP1GAPP47736 663 aa17.21■□□□□ 0.35
CLSTN3-204ENST00000535313 GALK1P51570 392 aa17.21■□□□□ 0.35
CLSTN3-204ENST00000535313 CACNA2D1P54289 1103 aa17.21■□□□□ 0.35
CLSTN3-204ENST00000535313 DLG4P78352 724 aa17.21■□□□□ 0.35
CLSTN3-204ENST00000535313 IFRD2Q12894 506 aaPredicted RBP17.21■□□□□ 0.35
CLSTN3-204ENST00000535313 TAF10Q12962 218 aa17.21■□□□□ 0.35
CLSTN3-204ENST00000535313 EML3Q32P44 896 aa17.21■□□□□ 0.35
CLSTN3-204ENST00000535313 ZACNQ401N2 412 aa17.21■□□□□ 0.35
CLSTN3-204ENST00000535313 FBXO43Q4G163 708 aa17.21■□□□□ 0.35
CLSTN3-204ENST00000535313 NUP93Q8N1F7 819 aa17.21■□□□□ 0.35
CLSTN3-204ENST00000535313 TAF4BQ92750 862 aa17.21■□□□□ 0.35
CLSTN3-204ENST00000535313 CHFRQ96EP1 664 aa17.21■□□□□ 0.35
CLSTN3-204ENST00000535313 USP18Q9UMW8 372 aa17.21■□□□□ 0.35
CLSTN3-204ENST00000535313 SLC8A2Q9UPR5 921 aa17.21■□□□□ 0.35
CLSTN3-204ENST00000535313 ANAPC1Q9H1A4 1944 aa17.21■□□□□ 0.35
CLSTN3-204ENST00000535313 A0A1W2PQ27 194 aa17.2■□□□□ 0.34
CLSTN3-204ENST00000535313 A0A1W2PQ64 194 aa17.2■□□□□ 0.34
CLSTN3-204ENST00000535313 A0A1W2PQD8 194 aa17.2■□□□□ 0.34
CLSTN3-204ENST00000535313 LEFTY2O00292 366 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms