RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 MAPK8IP1Q9UQF2 711 aa16.45■□□□□ 0.22
CPSF1-211ENST00000533492 TRAF3IP3Q9Y228 551 aa16.45■□□□□ 0.22
CPSF1-211ENST00000533492 OBSL1O75147 1896 aa16.45■□□□□ 0.22
CPSF1-211ENST00000533492 ATP8B3O60423 1300 aa16.45■□□□□ 0.22
CPSF1-211ENST00000533492 KIF26AQ9ULI4 1882 aaPredicted RBP16.44■□□□□ 0.22
CPSF1-211ENST00000533492 C2orf78A6NCI8 922 aa16.44■□□□□ 0.22
CPSF1-211ENST00000533492 GOLGA6L4A6NEF3 574 aa16.44■□□□□ 0.22
CPSF1-211ENST00000533492 IKBKBO14920 756 aa16.44■□□□□ 0.22
CPSF1-211ENST00000533492 ABL1P00519 1130 aa16.44■□□□□ 0.22
CPSF1-211ENST00000533492 NR2F2P24468 414 aa16.44■□□□□ 0.22
CPSF1-211ENST00000533492 RPL13P26373 211 aaKnown RBP16.44■□□□□ 0.22
CPSF1-211ENST00000533492 PPP3CCP48454 512 aa16.44■□□□□ 0.22
CPSF1-211ENST00000533492 IFNAR2P48551 515 aa16.44■□□□□ 0.22
CPSF1-211ENST00000533492 USP46P62068 366 aa16.44■□□□□ 0.22
CPSF1-211ENST00000533492 SATB1Q01826 763 aa16.44■□□□□ 0.22
CPSF1-211ENST00000533492 GRSF1Q12849 480 aaKnown RBP eCLIP16.44■□□□□ 0.22
CPSF1-211ENST00000533492 GAS6Q14393 721 aa16.44■□□□□ 0.22
CPSF1-211ENST00000533492 SCARA5Q6ZMJ2 495 aa16.44■□□□□ 0.22
CPSF1-211ENST00000533492 SUMF1Q8NBK3 374 aa16.44■□□□□ 0.22
CPSF1-211ENST00000533492 NELL1Q92832 810 aa16.44■□□□□ 0.22
CPSF1-211ENST00000533492 EXOC4Q96A65 974 aa16.44■□□□□ 0.22
CPSF1-211ENST00000533492 TNIP3Q96KP6 325 aa16.44■□□□□ 0.22
CPSF1-211ENST00000533492 MED10Q9BTT4 135 aa16.44■□□□□ 0.22
CPSF1-211ENST00000533492 B3GNT5Q9BYG0 378 aa16.44■□□□□ 0.22
CPSF1-211ENST00000533492 ZNF518BQ9C0D4 1074 aa16.44■□□□□ 0.22
CPSF1-211ENST00000533492 GOLPH3LQ9H4A5 285 aa16.44■□□□□ 0.22
CPSF1-211ENST00000533492 DUS2Q9NX74 493 aaKnown RBP16.44■□□□□ 0.22
CPSF1-211ENST00000533492 GCNT4Q9P109 453 aa16.44■□□□□ 0.22
CPSF1-211ENST00000533492 NCDNQ9UBB6 729 aa16.44■□□□□ 0.22
CPSF1-211ENST00000533492 GREB1Q4ZG55 1949 aa16.43■□□□□ 0.22
CPSF1-211ENST00000533492 CLDN5O00501 218 aa16.43■□□□□ 0.22
CPSF1-211ENST00000533492 LILRB5O75023 590 aa16.43■□□□□ 0.22
CPSF1-211ENST00000533492 VNN1O95497 513 aa16.43■□□□□ 0.22
CPSF1-211ENST00000533492 KRT13P13646 458 aa16.43■□□□□ 0.22
CPSF1-211ENST00000533492 ARSAP15289 507 aa16.43■□□□□ 0.22
CPSF1-211ENST00000533492 PFKLP17858 780 aa16.43■□□□□ 0.22
CPSF1-211ENST00000533492 RAP1GAPP47736 663 aa16.43■□□□□ 0.22
CPSF1-211ENST00000533492 VAMP7P51809 220 aa16.43■□□□□ 0.22
CPSF1-211ENST00000533492 NOP14P78316 857 aaKnown RBP16.43■□□□□ 0.22
CPSF1-211ENST00000533492 IFRD2Q12894 506 aaPredicted RBP16.43■□□□□ 0.22
CPSF1-211ENST00000533492 CCINQ13939 588 aa16.43■□□□□ 0.22
CPSF1-211ENST00000533492 ZNF77Q15935 545 aa16.43■□□□□ 0.22
CPSF1-211ENST00000533492 ZACNQ401N2 412 aa16.43■□□□□ 0.22
CPSF1-211ENST00000533492 Q6ZS52 159 aa16.43■□□□□ 0.22
CPSF1-211ENST00000533492 SV2AQ7L0J3 742 aa16.43■□□□□ 0.22
CPSF1-211ENST00000533492 GUF1Q8N442 669 aaKnown RBP16.43■□□□□ 0.22
CPSF1-211ENST00000533492 CPA6Q8N4T0 437 aa16.43■□□□□ 0.22
CPSF1-211ENST00000533492 SH3RF2Q8TEC5 729 aa16.43■□□□□ 0.22
CPSF1-211ENST00000533492 OSCP1Q8WVF1 389 aa16.43■□□□□ 0.22
CPSF1-211ENST00000533492 TAF4BQ92750 862 aa16.43■□□□□ 0.22
CPSF1-211ENST00000533492 SECISBP2LQ93073 1101 aaKnown RBP16.43■□□□□ 0.22
CPSF1-211ENST00000533492 ELMO3Q96BJ8 720 aa16.43■□□□□ 0.22
CPSF1-211ENST00000533492 SLITRK1Q96PX8 696 aa16.43■□□□□ 0.22
CPSF1-211ENST00000533492 TTLL2Q9BWV7 592 aa16.43■□□□□ 0.22
CPSF1-211ENST00000533492 WDR87Q6ZQQ6 2873 aa16.43■□□□□ 0.22
CPSF1-211ENST00000533492 OTOL1A6NHN0 477 aaPredicted RBP16.42■□□□□ 0.22
CPSF1-211ENST00000533492 MAPK13O15264 365 aa16.42■□□□□ 0.22
CPSF1-211ENST00000533492 TDGF1P13385 188 aa16.42■□□□□ 0.22
CPSF1-211ENST00000533492 TRIM21P19474 475 aaKnown RBP16.42■□□□□ 0.22
CPSF1-211ENST00000533492 PIK3CAP42336 1068 aa16.42■□□□□ 0.22
CPSF1-211ENST00000533492 TAF10Q12962 218 aa16.42■□□□□ 0.22
CPSF1-211ENST00000533492 NR1H3Q13133 447 aa16.42■□□□□ 0.22
CPSF1-211ENST00000533492 ADAM9Q13443 819 aa16.42■□□□□ 0.22
CPSF1-211ENST00000533492 NFIL3Q16649 462 aa16.42■□□□□ 0.22
CPSF1-211ENST00000533492 WDR44Q5JSH3 913 aa16.42■□□□□ 0.22
CPSF1-211ENST00000533492 INTS8Q75QN2 995 aaKnown RBP16.42■□□□□ 0.22
CPSF1-211ENST00000533492 KIAA2013Q8IYS2 634 aa16.42■□□□□ 0.22
CPSF1-211ENST00000533492 NUP93Q8N1F7 819 aa16.42■□□□□ 0.22
CPSF1-211ENST00000533492 DCLK2Q8N568 766 aa16.42■□□□□ 0.22
CPSF1-211ENST00000533492 RIN3Q8TB24 985 aa16.42■□□□□ 0.22
CPSF1-211ENST00000533492 ATP2A3Q93084 1043 aa16.42■□□□□ 0.22
CPSF1-211ENST00000533492 IMPG2Q9BZV3 1241 aa16.42■□□□□ 0.22
CPSF1-211ENST00000533492 ECT2Q9H8V3 914 aa16.42■□□□□ 0.22
CPSF1-211ENST00000533492 RAB23Q9ULC3 237 aa16.42■□□□□ 0.22
CPSF1-211ENST00000533492 ARHGAP26Q9UNA1 814 aa16.42■□□□□ 0.22
CPSF1-211ENST00000533492 WNT6Q9Y6F9 365 aa16.42■□□□□ 0.22
CPSF1-211ENST00000533492 GVINP1Q7Z2Y8 2422 aa16.42■□□□□ 0.22
CPSF1-211ENST00000533492 PTPRDP23468 1912 aa16.42■□□□□ 0.22
CPSF1-211ENST00000533492 ANAPC1Q9H1A4 1944 aa16.42■□□□□ 0.22
CPSF1-211ENST00000533492 ZNF840PA6NDX5 716 aa16.41■□□□□ 0.22
CPSF1-211ENST00000533492 TRDMT1O14717 391 aaKnown RBP16.41■□□□□ 0.22
CPSF1-211ENST00000533492 RTN3O95197 1032 aaPredicted RBP16.41■□□□□ 0.22
CPSF1-211ENST00000533492 HLA-DRAP01903 254 aa16.41■□□□□ 0.22
CPSF1-211ENST00000533492 YWHAQP27348 245 aa16.41■□□□□ 0.22
CPSF1-211ENST00000533492 GJA4P35212 333 aa16.41■□□□□ 0.22
CPSF1-211ENST00000533492 PSMC2P35998 433 aaKnown RBP16.41■□□□□ 0.22
CPSF1-211ENST00000533492 CACNA2D1P54289 1103 aa16.41■□□□□ 0.22
CPSF1-211ENST00000533492 NUCB2P80303 420 aa16.41■□□□□ 0.22
CPSF1-211ENST00000533492 USP4Q13107 963 aa16.41■□□□□ 0.22
CPSF1-211ENST00000533492 TMEM196Q5HYL7 178 aa16.41■□□□□ 0.22
CPSF1-211ENST00000533492 ACOT1Q86TX2 421 aa16.41■□□□□ 0.22
CPSF1-211ENST00000533492 FAM186BQ8IYM0 893 aa16.41■□□□□ 0.22
CPSF1-211ENST00000533492 SDCBP2Q9H190 292 aa16.41■□□□□ 0.22
CPSF1-211ENST00000533492 EPC1Q9H2F5 836 aa16.41■□□□□ 0.22
CPSF1-211ENST00000533492 SMG5Q9UPR3 1016 aaKnown RBP16.41■□□□□ 0.22
CPSF1-211ENST00000533492 ATG13O75143 517 aa16.4■□□□□ 0.22
CPSF1-211ENST00000533492 AKAP3O75969 853 aa16.4■□□□□ 0.22
CPSF1-211ENST00000533492 ASS1P00966 412 aaKnown RBP16.4■□□□□ 0.22
CPSF1-211ENST00000533492 TCF3P15923 654 aa16.4■□□□□ 0.22
CPSF1-211ENST00000533492 DRD1P21728 446 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms