RNA–Protein interactions for RNA: ENST00000531042.5

CPSF1-205, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-205ENST00000531042 LMNB2Q03252 620 aa16.84■□□□□ 0.29
CPSF1-205ENST00000531042 TRPC3Q13507 836 aa16.84■□□□□ 0.29
CPSF1-205ENST00000531042 KCNB1Q14721 858 aa16.84■□□□□ 0.29
CPSF1-205ENST00000531042 WDR5BQ86VZ2 330 aa16.84■□□□□ 0.29
CPSF1-205ENST00000531042 CPA6Q8N4T0 437 aa16.84■□□□□ 0.29
CPSF1-205ENST00000531042 SPRYD3Q8NCJ5 442 aa16.84■□□□□ 0.29
CPSF1-205ENST00000531042 TTC16Q8NEE8 873 aa16.84■□□□□ 0.29
CPSF1-205ENST00000531042 PLEKHO2Q8TD55 490 aa16.84■□□□□ 0.29
CPSF1-205ENST00000531042 SH3RF2Q8TEC5 729 aa16.84■□□□□ 0.29
CPSF1-205ENST00000531042 C8orf48Q96LL4 319 aa16.84■□□□□ 0.29
CPSF1-205ENST00000531042 TTLL2Q9BWV7 592 aa16.84■□□□□ 0.29
CPSF1-205ENST00000531042 XYLT2Q9H1B5 865 aa16.84■□□□□ 0.29
CPSF1-205ENST00000531042 ECT2Q9H8V3 914 aa16.84■□□□□ 0.29
CPSF1-205ENST00000531042 USP18Q9UMW8 372 aa16.84■□□□□ 0.29
CPSF1-205ENST00000531042 PRR5-ARHGAP8B1AHC4 643 aa16.83■□□□□ 0.28
CPSF1-205ENST00000531042 F8VP50 259 aa16.83■□□□□ 0.28
CPSF1-205ENST00000531042 ACTN4O43707 911 aaKnown RBP16.83■□□□□ 0.28
CPSF1-205ENST00000531042 ATG13O75143 517 aa16.83■□□□□ 0.28
CPSF1-205ENST00000531042 EGFP01133 1207 aa16.83■□□□□ 0.28
CPSF1-205ENST00000531042 PFKLP17858 780 aa16.83■□□□□ 0.28
CPSF1-205ENST00000531042 PTPN1P18031 435 aaKnown RBP16.83■□□□□ 0.28
CPSF1-205ENST00000531042 DRD1P21728 446 aa16.83■□□□□ 0.28
CPSF1-205ENST00000531042 SDHBP21912 280 aa16.83■□□□□ 0.28
CPSF1-205ENST00000531042 IFNAR2P48551 515 aa16.83■□□□□ 0.28
CPSF1-205ENST00000531042 CASP4P49662 377 aa16.83■□□□□ 0.28
CPSF1-205ENST00000531042 PDE6CP51160 858 aa16.83■□□□□ 0.28
CPSF1-205ENST00000531042 NOP14P78316 857 aaKnown RBP16.83■□□□□ 0.28
CPSF1-205ENST00000531042 ARHGAP8P85298 464 aa16.83■□□□□ 0.28
CPSF1-205ENST00000531042 SPEM2Q0P670 501 aa16.83■□□□□ 0.28
CPSF1-205ENST00000531042 STK4Q13043 487 aa16.83■□□□□ 0.28
CPSF1-205ENST00000531042 EML3Q32P44 896 aa16.83■□□□□ 0.28
CPSF1-205ENST00000531042 GOLGA5Q8TBA6 731 aa16.83■□□□□ 0.28
CPSF1-205ENST00000531042 ATP2A3Q93084 1043 aa16.83■□□□□ 0.28
CPSF1-205ENST00000531042 SYAP1Q96A49 352 aaPredicted RBP16.83■□□□□ 0.28
CPSF1-205ENST00000531042 PAGE5Q96GU1 130 aa16.83■□□□□ 0.28
CPSF1-205ENST00000531042 P2RY13Q9BPV8 354 aa16.83■□□□□ 0.28
CPSF1-205ENST00000531042 DPEP3Q9H4B8 488 aa16.83■□□□□ 0.28
CPSF1-205ENST00000531042 EHD2Q9NZN4 543 aa16.83■□□□□ 0.28
CPSF1-205ENST00000531042 TRPM5Q9NZQ8 1165 aa16.83■□□□□ 0.28
CPSF1-205ENST00000531042 ARHGAP26Q9UNA1 814 aa16.83■□□□□ 0.28
CPSF1-205ENST00000531042 WNT6Q9Y6F9 365 aa16.83■□□□□ 0.28
CPSF1-205ENST00000531042 MED19A0JLT2 244 aaPredicted RBP16.82■□□□□ 0.28
CPSF1-205ENST00000531042 LRP3O75074 770 aa16.82■□□□□ 0.28
CPSF1-205ENST00000531042 RNF40O75150 1001 aa16.82■□□□□ 0.28
CPSF1-205ENST00000531042 PHACTR2O75167 634 aa16.82■□□□□ 0.28
CPSF1-205ENST00000531042 CLDN10P78369 228 aa16.82■□□□□ 0.28
CPSF1-205ENST00000531042 PSMD2Q13200 908 aa16.82■□□□□ 0.28
CPSF1-205ENST00000531042 NAIF1Q69YI7 327 aaPredicted RBP16.82■□□□□ 0.28
CPSF1-205ENST00000531042 KIAA0895Q8NCT3 520 aa16.82■□□□□ 0.28
CPSF1-205ENST00000531042 PARD3BQ8TEW8 1205 aa16.82■□□□□ 0.28
CPSF1-205ENST00000531042 TMEM174Q8WUU8 243 aa16.82■□□□□ 0.28
CPSF1-205ENST00000531042 EXOC4Q96A65 974 aa16.82■□□□□ 0.28
CPSF1-205ENST00000531042 VRTNQ9H8Y1 702 aa16.82■□□□□ 0.28
CPSF1-205ENST00000531042 DMAC2Q9NW81 257 aa16.82■□□□□ 0.28
CPSF1-205ENST00000531042 NXF1Q9UBU9 619 aaKnown RBP16.82■□□□□ 0.28
CPSF1-205ENST00000531042 ATG2BQ96BY7 2078 aa16.82■□□□□ 0.28
CPSF1-205ENST00000531042 ZNF840PA6NDX5 716 aa16.81■□□□□ 0.28
CPSF1-205ENST00000531042 LRRIQ3A6PVS8 624 aaPredicted RBP16.81■□□□□ 0.28
CPSF1-205ENST00000531042 A8MXQ7 604 aa16.81■□□□□ 0.28
CPSF1-205ENST00000531042 PPP3CCP48454 512 aa16.81■□□□□ 0.28
CPSF1-205ENST00000531042 AP3M2P53677 418 aa16.81■□□□□ 0.28
CPSF1-205ENST00000531042 ATXN1P54253 815 aaKnown RBP16.81■□□□□ 0.28
CPSF1-205ENST00000531042 CACNA2D1P54289 1103 aa16.81■□□□□ 0.28
CPSF1-205ENST00000531042 ZXDBP98169 803 aa16.81■□□□□ 0.28
CPSF1-205ENST00000531042 NR1H3Q13133 447 aa16.81■□□□□ 0.28
CPSF1-205ENST00000531042 BIRC3Q13489 604 aa16.81■□□□□ 0.28
CPSF1-205ENST00000531042 KMT5BQ4FZB7 885 aa16.81■□□□□ 0.28
CPSF1-205ENST00000531042 FBXO43Q4G163 708 aa16.81■□□□□ 0.28
CPSF1-205ENST00000531042 TDRD10Q5VZ19 366 aaKnown RBP16.81■□□□□ 0.28
CPSF1-205ENST00000531042 CEP68Q76N32 757 aa16.81■□□□□ 0.28
CPSF1-205ENST00000531042 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.81■□□□□ 0.28
CPSF1-205ENST00000531042 SLC9A9Q8IVB4 645 aa16.81■□□□□ 0.28
CPSF1-205ENST00000531042 B3GALNT2Q8NCR0 500 aa16.81■□□□□ 0.28
CPSF1-205ENST00000531042 CD101Q93033 1021 aa16.81■□□□□ 0.28
CPSF1-205ENST00000531042 B3GNT5Q9BYG0 378 aa16.81■□□□□ 0.28
CPSF1-205ENST00000531042 ZNF518BQ9C0D4 1074 aa16.81■□□□□ 0.28
CPSF1-205ENST00000531042 ELOVL4Q9GZR5 314 aa16.81■□□□□ 0.28
CPSF1-205ENST00000531042 LINC00597Q9H2U6 94 aa16.81■□□□□ 0.28
CPSF1-205ENST00000531042 EXOC1Q9NV70 894 aa16.81■□□□□ 0.28
CPSF1-205ENST00000531042 TMEM30AQ9NV96 361 aa16.81■□□□□ 0.28
CPSF1-205ENST00000531042 SLC8A2Q9UPR5 921 aa16.81■□□□□ 0.28
CPSF1-205ENST00000531042 MYO16Q9Y6X6 1858 aa16.8■□□□□ 0.28
CPSF1-205ENST00000531042 KIAA1549LQ6ZVL6 1849 aa16.8■□□□□ 0.28
CPSF1-205ENST00000531042 CCDC163A0A0D9SF12 145 aa16.8■□□□□ 0.28
CPSF1-205ENST00000531042 A0A1B0GVL5 298 aa16.8■□□□□ 0.28
CPSF1-205ENST00000531042 CLDN5O00501 218 aa16.8■□□□□ 0.28
CPSF1-205ENST00000531042 C4BPAP04003 597 aaKnown RBP16.8■□□□□ 0.28
CPSF1-205ENST00000531042 PFKFB1P16118 471 aa16.8■□□□□ 0.28
CPSF1-205ENST00000531042 CMA1P23946 247 aa16.8■□□□□ 0.28
CPSF1-205ENST00000531042 PXNP49023 591 aaPredicted RBP16.8■□□□□ 0.28
CPSF1-205ENST00000531042 CDH8P55286 799 aa16.8■□□□□ 0.28
CPSF1-205ENST00000531042 SLC7A9P82251 487 aa16.8■□□□□ 0.28
CPSF1-205ENST00000531042 FAM160A2Q8N612 972 aaPredicted RBP16.8■□□□□ 0.28
CPSF1-205ENST00000531042 EZH1Q92800 747 aaPredicted RBP16.8■□□□□ 0.28
CPSF1-205ENST00000531042 RNF38Q9H0F5 515 aa16.8■□□□□ 0.28
CPSF1-205ENST00000531042 KCTD10Q9H3F6 313 aa16.8■□□□□ 0.28
CPSF1-205ENST00000531042 SMYD3Q9H7B4 428 aa16.8■□□□□ 0.28
CPSF1-205ENST00000531042 USP25Q9UHP3 1055 aa16.8■□□□□ 0.28
CPSF1-205ENST00000531042 CDV3Q9UKY7 258 aaKnown RBP16.8■□□□□ 0.28
CPSF1-205ENST00000531042 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms