RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 MAN1A1P33908 653 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 ITIH3Q06033 890 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 C2CD6Q53TS8 623 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 ZNF572Q7Z3I7 529 aaPredicted RBP22.35■■□□□ 1.17
VPS28-212ENST00000530836 DEFB123Q8N688 67 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 UBA3Q8TBC4 463 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 SPG21Q9NZD8 308 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 FAN1Q9Y2M0 1017 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 TMEM191CA6NGB0 347 aa22.34■■□□□ 1.17
VPS28-212ENST00000530836 SIGLEC16A6NMB1 481 aa22.34■■□□□ 1.17
VPS28-212ENST00000530836 NT5C1B-RDH14C9J2C7 533 aa22.34■■□□□ 1.17
VPS28-212ENST00000530836 KCNK3O14649 394 aa22.34■■□□□ 1.17
VPS28-212ENST00000530836 NRP1O14786 923 aa22.34■■□□□ 1.17
VPS28-212ENST00000530836 SPOPO43791 374 aa22.34■■□□□ 1.17
VPS28-212ENST00000530836 TADA3O75528 432 aa22.34■■□□□ 1.17
VPS28-212ENST00000530836 PROSCO94903 275 aa22.34■■□□□ 1.17
VPS28-212ENST00000530836 PPM1AP35813 382 aa22.34■■□□□ 1.17
VPS28-212ENST00000530836 PSMC1P62191 440 aaKnown RBP22.34■■□□□ 1.17
VPS28-212ENST00000530836 PPP1R15BQ5SWA1 713 aa22.34■■□□□ 1.17
VPS28-212ENST00000530836 DCUN1D2Q6PH85 259 aa22.34■■□□□ 1.17
VPS28-212ENST00000530836 CD300LGQ6UXG3 332 aa22.34■■□□□ 1.17
VPS28-212ENST00000530836 TTC30AQ86WT1 665 aa22.34■■□□□ 1.17
VPS28-212ENST00000530836 ZDHHC17Q8IUH5 632 aa22.34■■□□□ 1.17
VPS28-212ENST00000530836 THEM5Q8N1Q8 247 aa22.34■■□□□ 1.17
VPS28-212ENST00000530836 SLC39A11Q8N1S5 342 aa22.34■■□□□ 1.17
VPS28-212ENST00000530836 COG1Q8WTW3 980 aa22.34■■□□□ 1.17
VPS28-212ENST00000530836 SLC35F5Q8WV83 523 aa22.34■■□□□ 1.17
VPS28-212ENST00000530836 GOLGA1Q92805 767 aa22.34■■□□□ 1.17
VPS28-212ENST00000530836 ACBD6Q9BR61 282 aa22.34■■□□□ 1.17
VPS28-212ENST00000530836 SLC4A5Q9BY07 1137 aa22.34■■□□□ 1.17
VPS28-212ENST00000530836 CARD9Q9H257 536 aa22.34■■□□□ 1.17
VPS28-212ENST00000530836 PCDHB8Q9UN66 801 aa22.34■■□□□ 1.17
VPS28-212ENST00000530836 RFXAPO00287 272 aa22.33■■□□□ 1.17
VPS28-212ENST00000530836 ZNF185O15231 689 aa22.33■■□□□ 1.17
VPS28-212ENST00000530836 CTNNA2P26232 953 aa22.33■■□□□ 1.17
VPS28-212ENST00000530836 CXCR5P32302 372 aa22.33■■□□□ 1.17
VPS28-212ENST00000530836 ACADSBP45954 432 aa22.33■■□□□ 1.17
VPS28-212ENST00000530836 OR1G1P47890 313 aa22.33■■□□□ 1.17
VPS28-212ENST00000530836 PLCB3Q01970 1234 aa22.33■■□□□ 1.17
VPS28-212ENST00000530836 GPM6BQ13491 265 aa22.33■■□□□ 1.17
VPS28-212ENST00000530836 XYLT1Q86Y38 959 aa22.33■■□□□ 1.17
VPS28-212ENST00000530836 UBXN4Q92575 508 aa22.33■■□□□ 1.17
VPS28-212ENST00000530836 MCRS1Q96EZ8 462 aa22.33■■□□□ 1.17
VPS28-212ENST00000530836 CAPZA3Q96KX2 299 aa22.33■■□□□ 1.17
VPS28-212ENST00000530836 SYT15Q9BQS2 421 aa22.33■■□□□ 1.17
VPS28-212ENST00000530836 PRDM12Q9H4Q4 367 aa22.33■■□□□ 1.17
VPS28-212ENST00000530836 TMEM110-MUSTN1A8MSY1 372 aa22.32■■□□□ 1.16
VPS28-212ENST00000530836 DYNC1I1O14576 645 aa22.32■■□□□ 1.16
VPS28-212ENST00000530836 FGF18O76093 207 aa22.32■■□□□ 1.16
VPS28-212ENST00000530836 ITGB1P05556 798 aa22.32■■□□□ 1.16
VPS28-212ENST00000530836 KRT3P12035 628 aa22.32■■□□□ 1.16
VPS28-212ENST00000530836 CTNNA1P35221 906 aaKnown RBP22.32■■□□□ 1.16
VPS28-212ENST00000530836 PIGHQ14442 188 aaPredicted RBP22.32■■□□□ 1.16
VPS28-212ENST00000530836 TMEM110Q86TL2 294 aa22.32■■□□□ 1.16
VPS28-212ENST00000530836 SLC2A14Q8TDB8 520 aa22.32■■□□□ 1.16
VPS28-212ENST00000530836 FNIP1Q8TF40 1166 aa22.32■■□□□ 1.16
VPS28-212ENST00000530836 RABGGTAQ92696 567 aa22.32■■□□□ 1.16
VPS28-212ENST00000530836 CD101Q93033 1021 aa22.32■■□□□ 1.16
VPS28-212ENST00000530836 IGSF21Q96ID5 467 aa22.32■■□□□ 1.16
VPS28-212ENST00000530836 HSFY1Q96LI6 401 aa22.32■■□□□ 1.16
VPS28-212ENST00000530836 PSMB7Q99436 277 aa22.32■■□□□ 1.16
VPS28-212ENST00000530836 COLEC11Q9BWP8 271 aa22.32■■□□□ 1.16
VPS28-212ENST00000530836 ST7Q9NRC1 585 aa22.32■■□□□ 1.16
VPS28-212ENST00000530836 SBDSQ9Y3A5 250 aaKnown RBP eCLIP22.32■■□□□ 1.16
VPS28-212ENST00000530836 CDH23Q9H251 3354 aa22.32■■□□□ 1.16
VPS28-212ENST00000530836 DDX3YO15523 660 aaKnown RBP22.31■■□□□ 1.16
VPS28-212ENST00000530836 LPXNO60711 386 aa22.31■■□□□ 1.16
VPS28-212ENST00000530836 ERBB2P04626 1255 aa22.31■■□□□ 1.16
VPS28-212ENST00000530836 CCDC130P13994 396 aa22.31■■□□□ 1.16
VPS28-212ENST00000530836 IGFBP6P24592 240 aaPredicted RBP22.31■■□□□ 1.16
VPS28-212ENST00000530836 BRCC3P46736 316 aa22.31■■□□□ 1.16
VPS28-212ENST00000530836 RPL34P49207 117 aaKnown RBP22.31■■□□□ 1.16
VPS28-212ENST00000530836 MAPRE1Q15691 268 aaKnown RBP22.31■■□□□ 1.16
VPS28-212ENST00000530836 CYP4A22Q5TCH4 519 aa22.31■■□□□ 1.16
VPS28-212ENST00000530836 TMEM173Q86WV6 379 aaPredicted RBP22.31■■□□□ 1.16
VPS28-212ENST00000530836 SPPL3Q8TCT6 385 aa22.31■■□□□ 1.16
VPS28-212ENST00000530836 ACTRT1Q8TDG2 376 aa22.31■■□□□ 1.16
VPS28-212ENST00000530836 BTBD6Q96KE9 485 aa22.31■■□□□ 1.16
VPS28-212ENST00000530836 DUSP16Q9BY84 665 aa22.31■■□□□ 1.16
VPS28-212ENST00000530836 ALG13Q9NP73 1137 aaKnown RBP22.31■■□□□ 1.16
VPS28-212ENST00000530836 PRG3Q9Y2Y8 225 aaPredicted RBP22.31■■□□□ 1.16
VPS28-212ENST00000530836 PCDHA3Q9Y5H8 950 aa22.31■■□□□ 1.16
VPS28-212ENST00000530836 HCRTO43612 131 aa22.31■■□□□ 1.16
VPS28-212ENST00000530836 ADORA2BP29275 332 aa22.31■■□□□ 1.16
VPS28-212ENST00000530836 PLA2G4AP47712 749 aa22.31■■□□□ 1.16
VPS28-212ENST00000530836 KRT17Q04695 432 aa22.31■■□□□ 1.16
VPS28-212ENST00000530836 PDE4CQ08493 712 aa22.31■■□□□ 1.16
VPS28-212ENST00000530836 OVOS1Q6IE37 1185 aa22.31■■□□□ 1.16
VPS28-212ENST00000530836 PHLDB2Q86SQ0 1253 aa22.31■■□□□ 1.16
VPS28-212ENST00000530836 NIPA2Q8N8Q9 360 aa22.31■■□□□ 1.16
VPS28-212ENST00000530836 MYCBPAPQ8TBZ2 947 aa22.31■■□□□ 1.16
VPS28-212ENST00000530836 GDPD5Q8WTR4 605 aa22.31■■□□□ 1.16
VPS28-212ENST00000530836 MCEEQ96PE7 176 aa22.31■■□□□ 1.16
VPS28-212ENST00000530836 MTMR10Q9NXD2 777 aa22.31■■□□□ 1.16
VPS28-212ENST00000530836 TTC7AQ9ULT0 858 aaPredicted RBP22.31■■□□□ 1.16
VPS28-212ENST00000530836 TIMM13Q9Y5L4 95 aaPredicted RBP22.31■■□□□ 1.16
VPS28-212ENST00000530836 XPO1O14980 1071 aaKnown RBP22.3■■□□□ 1.16
VPS28-212ENST00000530836 SYN3O14994 580 aa22.3■■□□□ 1.16
VPS28-212ENST00000530836 GRM6O15303 877 aa22.3■■□□□ 1.16
VPS28-212ENST00000530836 TADA2AO75478 443 aa22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms