RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 MED10Q9BTT4 135 aa13.87□□□□□ -0.19
CPSF1-204ENST00000529288 LINC00597Q9H2U6 94 aa13.87□□□□□ -0.19
CPSF1-204ENST00000529288 DPEP3Q9H4B8 488 aa13.87□□□□□ -0.19
CPSF1-204ENST00000529288 CFAP45Q9UL16 551 aa13.87□□□□□ -0.19
CPSF1-204ENST00000529288 TCHHQ07283 1943 aa13.86□□□□□ -0.19
CPSF1-204ENST00000529288 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.86□□□□□ -0.19
CPSF1-204ENST00000529288 PVALEFA0A1B0GWK0 134 aa13.86□□□□□ -0.19
CPSF1-204ENST00000529288 CLDN5O00501 218 aa13.86□□□□□ -0.19
CPSF1-204ENST00000529288 SCAMP3O14828 347 aaKnown RBP13.86□□□□□ -0.19
CPSF1-204ENST00000529288 PAPSS2O95340 614 aaPredicted RBP13.86□□□□□ -0.19
CPSF1-204ENST00000529288 DRD1P21728 446 aa13.86□□□□□ -0.19
CPSF1-204ENST00000529288 KCNA4P22459 653 aa13.86□□□□□ -0.19
CPSF1-204ENST00000529288 TGM1P22735 817 aa13.86□□□□□ -0.19
CPSF1-204ENST00000529288 CDH8P55286 799 aa13.86□□□□□ -0.19
CPSF1-204ENST00000529288 SNRPFP62306 86 aaKnown RBP13.86□□□□□ -0.19
CPSF1-204ENST00000529288 PKP1Q13835 747 aa13.86□□□□□ -0.19
CPSF1-204ENST00000529288 CCDC6Q16204 474 aa13.86□□□□□ -0.19
CPSF1-204ENST00000529288 TDRD10Q5VZ19 366 aaKnown RBP13.86□□□□□ -0.19
CPSF1-204ENST00000529288 SCARA5Q6ZMJ2 495 aa13.86□□□□□ -0.19
CPSF1-204ENST00000529288 LIMS2Q7Z4I7 341 aa13.86□□□□□ -0.19
CPSF1-204ENST00000529288 FAM160A2Q8N612 972 aaPredicted RBP13.86□□□□□ -0.19
CPSF1-204ENST00000529288 RPLP0P6Q8NHW5 317 aa13.86□□□□□ -0.19
CPSF1-204ENST00000529288 CD101Q93033 1021 aa13.86□□□□□ -0.19
CPSF1-204ENST00000529288 ATP2A3Q93084 1043 aa13.86□□□□□ -0.19
CPSF1-204ENST00000529288 SYAP1Q96A49 352 aaPredicted RBP13.86□□□□□ -0.19
CPSF1-204ENST00000529288 HHIPQ96QV1 700 aa13.86□□□□□ -0.19
CPSF1-204ENST00000529288 ZNF518BQ9C0D4 1074 aa13.86□□□□□ -0.19
CPSF1-204ENST00000529288 SEMA4GQ9NTN9 838 aa13.86□□□□□ -0.19
CPSF1-204ENST00000529288 EXOC1Q9NV70 894 aa13.86□□□□□ -0.19
CPSF1-204ENST00000529288 SMPD4Q9NXE4 827 aa13.86□□□□□ -0.19
CPSF1-204ENST00000529288 EHD2Q9NZN4 543 aa13.86□□□□□ -0.19
CPSF1-204ENST00000529288 GCNT4Q9P109 453 aa13.86□□□□□ -0.19
CPSF1-204ENST00000529288 NME7Q9Y5B8 376 aa13.86□□□□□ -0.19
CPSF1-204ENST00000529288 SPTBN4Q9H254 2564 aa13.85□□□□□ -0.19
CPSF1-204ENST00000529288 F5P12259 2224 aa13.85□□□□□ -0.19
CPSF1-204ENST00000529288 LEFTY2O00292 366 aa13.85□□□□□ -0.19
CPSF1-204ENST00000529288 TACC1O75410 805 aa13.85□□□□□ -0.19
CPSF1-204ENST00000529288 RPP40O75818 363 aaKnown RBP13.85□□□□□ -0.19
CPSF1-204ENST00000529288 RAP1GAPP47736 663 aa13.85□□□□□ -0.19
CPSF1-204ENST00000529288 PDE6CP51160 858 aa13.85□□□□□ -0.19
CPSF1-204ENST00000529288 CACNA2D1P54289 1103 aa13.85□□□□□ -0.19
CPSF1-204ENST00000529288 SEC13P55735 322 aa13.85□□□□□ -0.19
CPSF1-204ENST00000529288 EHHADHQ08426 723 aa13.85□□□□□ -0.19
CPSF1-204ENST00000529288 USP4Q13107 963 aa13.85□□□□□ -0.19
CPSF1-204ENST00000529288 EML3Q32P44 896 aa13.85□□□□□ -0.19
CPSF1-204ENST00000529288 B3GNT5Q9BYG0 378 aa13.85□□□□□ -0.19
CPSF1-204ENST00000529288 SMYD3Q9H7B4 428 aa13.85□□□□□ -0.19
CPSF1-204ENST00000529288 ARHGAP26Q9UNA1 814 aa13.85□□□□□ -0.19
CPSF1-204ENST00000529288 ZNF292O60281 2723 aa13.85□□□□□ -0.19
CPSF1-204ENST00000529288 DMXL1Q9Y485 3027 aa13.84□□□□□ -0.19
CPSF1-204ENST00000529288 A0A1B0GVL5 298 aa13.84□□□□□ -0.19
CPSF1-204ENST00000529288 ZNF840PA6NDX5 716 aa13.84□□□□□ -0.19
CPSF1-204ENST00000529288 NFATC1O95644 943 aa13.84□□□□□ -0.19
CPSF1-204ENST00000529288 PDIA4P13667 645 aaKnown RBP13.84□□□□□ -0.19
CPSF1-204ENST00000529288 ATICP31939 592 aa13.84□□□□□ -0.19
CPSF1-204ENST00000529288 TAF10Q12962 218 aa13.84□□□□□ -0.19
CPSF1-204ENST00000529288 BMT2Q1RMZ1 405 aa13.84□□□□□ -0.19
CPSF1-204ENST00000529288 ZNF699Q32M78 642 aa13.84□□□□□ -0.19
CPSF1-204ENST00000529288 KMT5BQ4FZB7 885 aa13.84□□□□□ -0.19
CPSF1-204ENST00000529288 CACNA2D4Q7Z3S7 1137 aa13.84□□□□□ -0.19
CPSF1-204ENST00000529288 TTC30AQ86WT1 665 aa13.84□□□□□ -0.19
CPSF1-204ENST00000529288 GOLGA5Q8TBA6 731 aa13.84□□□□□ -0.19
CPSF1-204ENST00000529288 GAB3Q8WWW8 586 aa13.84□□□□□ -0.19
CPSF1-204ENST00000529288 PAGE5Q96GU1 130 aa13.84□□□□□ -0.19
CPSF1-204ENST00000529288 C8orf48Q96LL4 319 aa13.84□□□□□ -0.19
CPSF1-204ENST00000529288 RTKNQ9BST9 563 aa13.84□□□□□ -0.19
CPSF1-204ENST00000529288 ELOVL4Q9GZR5 314 aa13.84□□□□□ -0.19
CPSF1-204ENST00000529288 RNF38Q9H0F5 515 aa13.84□□□□□ -0.19
CPSF1-204ENST00000529288 ARRDC1-AS1Q9H2J1 176 aa13.84□□□□□ -0.19
CPSF1-204ENST00000529288 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.84□□□□□ -0.19
CPSF1-204ENST00000529288 CGNQ9P2M7 1197 aaKnown RBP13.84□□□□□ -0.19
CPSF1-204ENST00000529288 RCOR1Q9UKL0 485 aa13.84□□□□□ -0.19
CPSF1-204ENST00000529288 CPQQ9Y646 472 aa13.84□□□□□ -0.19
CPSF1-204ENST00000529288 GPR179Q6PRD1 2367 aa13.84□□□□□ -0.19
CPSF1-204ENST00000529288 FANCMQ8IYD8 2048 aa13.83□□□□□ -0.2
CPSF1-204ENST00000529288 NUP210Q8TEM1 1887 aaPredicted RBP13.83□□□□□ -0.2
CPSF1-204ENST00000529288 LRRIQ3A6PVS8 624 aaPredicted RBP13.83□□□□□ -0.2
CPSF1-204ENST00000529288 FAM163BP0C2L3 166 aa13.83□□□□□ -0.2
CPSF1-204ENST00000529288 SLFN14P0C7P3 912 aa13.83□□□□□ -0.2
CPSF1-204ENST00000529288 MBL2P11226 248 aaPredicted RBP13.83□□□□□ -0.2
CPSF1-204ENST00000529288 HOXA6P31267 233 aa13.83□□□□□ -0.2
CPSF1-204ENST00000529288 ZXDBP98169 803 aa13.83□□□□□ -0.2
CPSF1-204ENST00000529288 STK4Q13043 487 aa13.83□□□□□ -0.2
CPSF1-204ENST00000529288 NCOA4Q13772 614 aa13.83□□□□□ -0.2
CPSF1-204ENST00000529288 CSRP2Q16527 193 aa13.83□□□□□ -0.2
CPSF1-204ENST00000529288 FBXO43Q4G163 708 aa13.83□□□□□ -0.2
CPSF1-204ENST00000529288 AASDHQ4L235 1098 aaPredicted RBP13.83□□□□□ -0.2
CPSF1-204ENST00000529288 ZNF667Q5HYK9 610 aa13.83□□□□□ -0.2
CPSF1-204ENST00000529288 CEP135Q66GS9 1140 aa13.83□□□□□ -0.2
CPSF1-204ENST00000529288 ATL3Q6DD88 541 aa13.83□□□□□ -0.2
CPSF1-204ENST00000529288 PRR23CQ6ZRP0 262 aa13.83□□□□□ -0.2
CPSF1-204ENST00000529288 FILIP1Q7Z7B0 1213 aa13.83□□□□□ -0.2
CPSF1-204ENST00000529288 KBTBD6Q86V97 674 aa13.83□□□□□ -0.2
CPSF1-204ENST00000529288 C12orf56Q8IXR9 622 aa13.83□□□□□ -0.2
CPSF1-204ENST00000529288 B3GALNT2Q8NCR0 500 aa13.83□□□□□ -0.2
CPSF1-204ENST00000529288 PLEKHO2Q8TD55 490 aa13.83□□□□□ -0.2
CPSF1-204ENST00000529288 FBXO32Q969P5 355 aa13.83□□□□□ -0.2
CPSF1-204ENST00000529288 CHAMP1Q96JM3 812 aa13.83□□□□□ -0.2
CPSF1-204ENST00000529288 SLITRK1Q96PX8 696 aa13.83□□□□□ -0.2
CPSF1-204ENST00000529288 GZF1Q9H116 711 aaPredicted RBP13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms