RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 PNOCQ13519 176 aa11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 PON2Q15165 354 aa11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 ZNF77Q15935 545 aa11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 NFIL3Q16649 462 aa11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 ZNF699Q32M78 642 aa11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 ITPRIPL2Q3MIP1 535 aa11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 ZCWPW2Q504Y3 356 aa11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 ZNF667Q5HYK9 610 aa11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 RALGPS2Q86X27 583 aaPredicted RBP11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 GUF1Q8N442 669 aaKnown RBP11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 ZBTB44Q8NCP5 570 aa11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 B3GALNT2Q8NCR0 500 aa11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 ERCC4Q92889 916 aaPredicted RBP11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 KCNK16Q96T55 309 aa11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 TTLL2Q9BWV7 592 aa11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 EBF3Q9H4W6 596 aa11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 APOBEC3GQ9HC16 384 aaKnown RBP11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 FBRSL1Q9HCM7 1045 aaKnown RBP11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 THG1LQ9NWX6 298 aaKnown RBP11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 HMGXB4Q9UGU5 601 aa11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 ZMYM5Q9UJ78 669 aa11.12□□□□□ -0.63
PRPF40B-204ENST00000527253 TRAV19A0A0A6YYK7 116 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 ZNF840PA6NDX5 716 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 IKBKBO14920 756 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 TRIM66O15016 1216 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 MAPK13O15264 365 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 LILRB5O75023 590 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 ASS1P00966 412 aaKnown RBP11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 HLA-DRAP01903 254 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 HDCP19113 662 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 NR2F2P24468 414 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 ASPAP45381 313 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 GCLMP48507 274 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 NOP14P78316 857 aaKnown RBP11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 FAM160A1Q05DH4 1040 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 DMWDQ09019 674 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 USP4Q13107 963 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 RUNX3Q13761 415 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 CCINQ13939 588 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 MTF1Q14872 753 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 SGSM1Q2NKQ1 1148 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 FSTL4Q6MZW2 842 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 DENND5BQ6ZUT9 1274 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 ACOT1Q86TX2 421 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 DCLK2Q8N568 766 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 EEF2KMTQ96G04 330 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 MSANTD3Q96H12 275 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 CEP295NLQ96MC4 621 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 RNF38Q9H0F5 515 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 LINC00597Q9H2U6 94 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 SEMA4AQ9H3S1 761 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 KIF9Q9HAQ2 790 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 ZSCAN32Q9NX65 697 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 FRMD4BQ9Y2L6 1034 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 WNT6Q9Y6F9 365 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 CFAP54Q96N23 3096 aa11.11□□□□□ -0.63
PRPF40B-204ENST00000527253 ATG2BQ96BY7 2078 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 K7ESF4 209 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 TNFRSF10BO14763 440 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 BEST1O76090 585 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 CKMP06732 381 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 USP17L7P0C7H9 530 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 ANXA13P27216 316 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 NDST1P52848 882 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 TAF10Q12962 218 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 ADAM9Q13443 819 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 BECN1Q14457 450 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 PKN3Q6P5Z2 889 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 C1orf228Q6PIY5 440 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 FAM35AQ86V20 835 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 FAM186BQ8IYM0 893 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 FUKQ8N0W3 1084 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 CRYBG2Q8N1P7 616 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 SPEM1Q8N4L4 309 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 ZMIZ2Q8NF64 920 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 SCAMP5Q8TAC9 235 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 TAS1R2Q8TE23 839 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 SH3RF2Q8TEC5 729 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 TAF4BQ92750 862 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 EZH1Q92800 747 aaPredicted RBP11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 SEMA4DQ92854 862 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 CCDC47Q96A33 483 aaKnown RBP11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 TWNKQ96RR1 684 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 ELOVL4Q9GZR5 314 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 TRPM5Q9NZQ8 1165 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 ARHGAP26Q9UNA1 814 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 PCDHGA2Q9Y5H1 932 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 CEP250Q9BV73 2442 aa11.1□□□□□ -0.63
PRPF40B-204ENST00000527253 TRDMT1O14717 391 aaKnown RBP11.09□□□□□ -0.63
PRPF40B-204ENST00000527253 KIF20AO95235 890 aa11.09□□□□□ -0.63
PRPF40B-204ENST00000527253 OLFM2O95897 454 aa11.09□□□□□ -0.63
PRPF40B-204ENST00000527253 CCDC130P13994 396 aa11.09□□□□□ -0.63
PRPF40B-204ENST00000527253 TCF3P15923 654 aa11.09□□□□□ -0.63
PRPF40B-204ENST00000527253 PSMC2P35998 433 aaKnown RBP11.09□□□□□ -0.63
PRPF40B-204ENST00000527253 PRCPP42785 496 aa11.09□□□□□ -0.63
PRPF40B-204ENST00000527253 CXCL12P48061 93 aa11.09□□□□□ -0.63
PRPF40B-204ENST00000527253 PGFP49763 221 aa11.09□□□□□ -0.63
PRPF40B-204ENST00000527253 GALK1P51570 392 aa11.09□□□□□ -0.63
PRPF40B-204ENST00000527253 PMS1P54277 932 aaKnown RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms