RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 ANO5Q75V66 913 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 ASAP3Q8TDY4 903 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 SDCCAG3Q96C92 435 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 PRG3Q9Y2Y8 225 aaPredicted RBP12.17□□□□□ -0.46
SYNPO-204ENST00000519664 TCRBV7S2A1N4TA0A589 114 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 H3BRB1 525 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 BANF1O75531 89 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 LMNAP02545 664 aaKnown RBP12.17□□□□□ -0.46
SYNPO-204ENST00000519664 TNFSF9P41273 254 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 PAPOLAP51003 745 aaKnown RBP12.17□□□□□ -0.46
SYNPO-204ENST00000519664 NDST1P52848 882 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 SH3BP5LQ7L8J4 393 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 DDIASQ8IXT1 998 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 IQCKQ8N0W5 287 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 PTPRN2Q92932 1015 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 TMEM176AQ96HP8 235 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 TTYH3Q9C0H2 523 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 UPF3AQ9H1J1 476 aaKnown RBP12.17□□□□□ -0.46
SYNPO-204ENST00000519664 MRPL46Q9H2W6 279 aaKnown RBP12.17□□□□□ -0.46
SYNPO-204ENST00000519664 TUT1Q9H6E5 874 aaKnown RBP12.17□□□□□ -0.46
SYNPO-204ENST00000519664 ATP8B3O60423 1300 aa12.17□□□□□ -0.46
SYNPO-204ENST00000519664 RNF103-CHMP3A0A140T963 221 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 ADCY3O60266 1144 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 MYL2P10916 166 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 BGNP21810 368 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 PTGER2P43116 358 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 TMED1Q13445 227 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 CES3Q6UWW8 571 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 BTNL9Q6UXG8 535 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 AGGF1Q8N302 714 aaeCLIP12.16□□□□□ -0.46
SYNPO-204ENST00000519664 ADAM32Q8TC27 787 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 SCG3Q8WXD2 468 aaKnown RBP12.16□□□□□ -0.46
SYNPO-204ENST00000519664 TSPAN16Q9UKR8 245 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 RIPK3Q9Y572 518 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 NQO1P15559 274 aaKnown RBP12.16□□□□□ -0.46
SYNPO-204ENST00000519664 XPAP23025 273 aaPredicted RBP12.16□□□□□ -0.46
SYNPO-204ENST00000519664 CCND1P24385 295 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 VCPP55072 806 aaKnown RBP12.16□□□□□ -0.46
SYNPO-204ENST00000519664 LAMC2Q13753 1193 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 STILQ15468 1287 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 FAM71AQ8IYT1 594 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 BHMTQ93088 406 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 ZMAT2Q96NC0 199 aaKnown RBP12.16□□□□□ -0.46
SYNPO-204ENST00000519664 PCDHB18PQ96TA0 734 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 KCNK1O00180 336 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 NVLO15381 856 aaKnown RBP12.16□□□□□ -0.46
SYNPO-204ENST00000519664 TRAPPC3O43617 180 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 CYP2C8P10632 490 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 ETFBP38117 255 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 PREPLQ4J6C6 727 aaPredicted RBP12.16□□□□□ -0.46
SYNPO-204ENST00000519664 APLFQ8IW19 511 aaPredicted RBP12.16□□□□□ -0.46
SYNPO-204ENST00000519664 NETO2Q8NC67 525 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 SHC3Q92529 594 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 CNPY3Q9BT09 278 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 BEGAINQ9BUH8 593 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 THEGQ9P2T0 379 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 HES2Q9Y543 173 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 DCDC2CA8MYV0 355 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 ANP32DO95626 131 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 POLBP06746 335 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 GTF2BQ00403 316 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 ANO4Q32M45 955 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 CCDC92Q53HC0 331 aaPredicted RBP12.16□□□□□ -0.46
SYNPO-204ENST00000519664 WDR49Q8IV35 697 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 TCP10LQ8TDR4 215 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 HES6Q96HZ4 224 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 SNTG2Q9NY99 539 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 DISP2A7MBM2 1401 aa12.16□□□□□ -0.46
SYNPO-204ENST00000519664 ADM5C9JUS6 153 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 PIK3CDO00329 1044 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 VDRP11473 427 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 CHKAP35790 457 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 MMP14P50281 582 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 MRPS35P82673 323 aaKnown RBP12.15□□□□□ -0.46
SYNPO-204ENST00000519664 C1QBPQ07021 282 aaKnown RBP12.15□□□□□ -0.46
SYNPO-204ENST00000519664 LAMB3Q13751 1172 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 C15orf59Q2T9L4 293 aaPredicted RBP12.15□□□□□ -0.46
SYNPO-204ENST00000519664 ANKRD20A4Q4UJ75 823 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 ANKRD20A8PQ5CZ79 823 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 ANKRD20A2Q5SQ80 823 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 ANKRD20A1Q5TYW2 823 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 NOTUMQ6P988 496 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 KREMEN1Q96MU8 473 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 LTN1O94822 1766 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 ASTN2O75129 1339 aaPredicted RBP12.15□□□□□ -0.46
SYNPO-204ENST00000519664 GOLGA8QA0A0J9YX86 632 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 GOLGA8OA6NCC3 632 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 GOLGA8NF8WBI6 632 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 PTPRAP18433 802 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 GLRA2P23416 452 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 MIPP30301 263 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 DGKDQ16760 1214 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 TTC39BQ5VTQ0 682 aaPredicted RBP12.15□□□□□ -0.46
SYNPO-204ENST00000519664 TATDN1Q6P1N9 297 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 SPDYE1Q8NFV5 336 aaPredicted RBP12.15□□□□□ -0.46
SYNPO-204ENST00000519664 SUN2Q9UH99 717 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 GRID1Q9ULK0 1009 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 CBX6O95503 412 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 GFAPP14136 432 aa12.15□□□□□ -0.46
SYNPO-204ENST00000519664 ADRA1DP25100 572 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms