RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 P4HA1P13674 534 aa18.63■□□□□ 0.57
DDX41-217ENST00000515562 PPP3CCP48454 512 aa18.63■□□□□ 0.57
DDX41-217ENST00000515562 GRSF1Q12849 480 aaKnown RBP eCLIP18.63■□□□□ 0.57
DDX41-217ENST00000515562 ZNF667Q5HYK9 610 aa18.63■□□□□ 0.57
DDX41-217ENST00000515562 WDR44Q5JSH3 913 aa18.63■□□□□ 0.57
DDX41-217ENST00000515562 TRIM68Q6AZZ1 485 aa18.63■□□□□ 0.57
DDX41-217ENST00000515562 CPA6Q8N4T0 437 aa18.63■□□□□ 0.57
DDX41-217ENST00000515562 ARL14EPQ8N8R7 260 aaPredicted RBP18.63■□□□□ 0.57
DDX41-217ENST00000515562 RIN3Q8TB24 985 aa18.63■□□□□ 0.57
DDX41-217ENST00000515562 ATP2A3Q93084 1043 aa18.63■□□□□ 0.57
DDX41-217ENST00000515562 SLC22A12Q96S37 553 aa18.63■□□□□ 0.57
DDX41-217ENST00000515562 DPEP3Q9H4B8 488 aa18.63■□□□□ 0.57
DDX41-217ENST00000515562 TRPM5Q9NZQ8 1165 aa18.63■□□□□ 0.57
DDX41-217ENST00000515562 GCNT4Q9P109 453 aa18.63■□□□□ 0.57
DDX41-217ENST00000515562 ARHGAP26Q9UNA1 814 aa18.63■□□□□ 0.57
DDX41-217ENST00000515562 NME7Q9Y5B8 376 aa18.63■□□□□ 0.57
DDX41-217ENST00000515562 ATP8B3O60423 1300 aa18.63■□□□□ 0.57
DDX41-217ENST00000515562 EP300Q09472 2414 aaPredicted RBP18.63■□□□□ 0.57
DDX41-217ENST00000515562 C2orf78A6NCI8 922 aa18.62■□□□□ 0.57
DDX41-217ENST00000515562 RHOBTB3O94955 611 aa18.62■□□□□ 0.57
DDX41-217ENST00000515562 C4BPAP04003 597 aaKnown RBP18.62■□□□□ 0.57
DDX41-217ENST00000515562 TCF3P15923 654 aa18.62■□□□□ 0.57
DDX41-217ENST00000515562 ID4P47928 161 aa18.62■□□□□ 0.57
DDX41-217ENST00000515562 TMEM196Q5HYL7 178 aa18.62■□□□□ 0.57
DDX41-217ENST00000515562 KIAA2013Q8IYS2 634 aa18.62■□□□□ 0.57
DDX41-217ENST00000515562 TMC2Q8TDI7 906 aa18.62■□□□□ 0.57
DDX41-217ENST00000515562 OSCP1Q8WVF1 389 aa18.62■□□□□ 0.57
DDX41-217ENST00000515562 CCDC34Q96HJ3 373 aa18.62■□□□□ 0.57
DDX41-217ENST00000515562 CHAMP1Q96JM3 812 aa18.62■□□□□ 0.57
DDX41-217ENST00000515562 TNIP3Q96KP6 325 aa18.62■□□□□ 0.57
DDX41-217ENST00000515562 CYP2S1Q96SQ9 504 aa18.62■□□□□ 0.57
DDX41-217ENST00000515562 SMYD3Q9H7B4 428 aa18.62■□□□□ 0.57
DDX41-217ENST00000515562 DUS2Q9NX74 493 aaKnown RBP18.62■□□□□ 0.57
DDX41-217ENST00000515562 RAB23Q9ULC3 237 aa18.62■□□□□ 0.57
DDX41-217ENST00000515562 TRAF3IP3Q9Y228 551 aa18.62■□□□□ 0.57
DDX41-217ENST00000515562 OTOL1A6NHN0 477 aaPredicted RBP18.61■□□□□ 0.57
DDX41-217ENST00000515562 TRDMT1O14717 391 aaKnown RBP18.61■□□□□ 0.57
DDX41-217ENST00000515562 IKBKBO14920 756 aa18.61■□□□□ 0.57
DDX41-217ENST00000515562 ARSAP15289 507 aa18.61■□□□□ 0.57
DDX41-217ENST00000515562 HDCP19113 662 aa18.61■□□□□ 0.57
DDX41-217ENST00000515562 IFNAR2P48551 515 aa18.61■□□□□ 0.57
DDX41-217ENST00000515562 USP46P62068 366 aa18.61■□□□□ 0.57
DDX41-217ENST00000515562 ZACNQ401N2 412 aa18.61■□□□□ 0.57
DDX41-217ENST00000515562 CEP135Q66GS9 1140 aa18.61■□□□□ 0.57
DDX41-217ENST00000515562 GPR161Q8N6U8 529 aaKnown RBP18.61■□□□□ 0.57
DDX41-217ENST00000515562 TTC16Q8NEE8 873 aa18.61■□□□□ 0.57
DDX41-217ENST00000515562 SH3RF2Q8TEC5 729 aa18.61■□□□□ 0.57
DDX41-217ENST00000515562 TAF4BQ92750 862 aa18.61■□□□□ 0.57
DDX41-217ENST00000515562 SLITRK1Q96PX8 696 aa18.61■□□□□ 0.57
DDX41-217ENST00000515562 ZNF518BQ9C0D4 1074 aa18.61■□□□□ 0.57
DDX41-217ENST00000515562 MAPK13O15264 365 aa18.6■□□□□ 0.57
DDX41-217ENST00000515562 VNN1O95497 513 aa18.6■□□□□ 0.57
DDX41-217ENST00000515562 PRR29P0C7W0 189 aa18.6■□□□□ 0.57
DDX41-217ENST00000515562 HOXA6P31267 233 aa18.6■□□□□ 0.57
DDX41-217ENST00000515562 FOXK2Q01167 660 aa18.6■□□□□ 0.57
DDX41-217ENST00000515562 DPYDQ12882 1025 aa18.6■□□□□ 0.57
DDX41-217ENST00000515562 NFIL3Q16649 462 aa18.6■□□□□ 0.57
DDX41-217ENST00000515562 SGSM1Q2NKQ1 1148 aa18.6■□□□□ 0.57
DDX41-217ENST00000515562 SCARA5Q6ZMJ2 495 aa18.6■□□□□ 0.57
DDX41-217ENST00000515562 KRBA2Q6ZNG9 492 aa18.6■□□□□ 0.57
DDX41-217ENST00000515562 CHFRQ96EP1 664 aa18.6■□□□□ 0.57
DDX41-217ENST00000515562 B3GNT5Q9BYG0 378 aa18.6■□□□□ 0.57
DDX41-217ENST00000515562 ECT2Q9H8V3 914 aa18.6■□□□□ 0.57
DDX41-217ENST00000515562 GMEB2Q9UKD1 530 aa18.6■□□□□ 0.57
DDX41-217ENST00000515562 SPTBN4Q9H254 2564 aa18.59■□□□□ 0.57
DDX41-217ENST00000515562 ZNF840PA6NDX5 716 aa18.59■□□□□ 0.57
DDX41-217ENST00000515562 K7ESF4 209 aa18.59■□□□□ 0.57
DDX41-217ENST00000515562 ATG13O75143 517 aa18.59■□□□□ 0.57
DDX41-217ENST00000515562 RTN3O95197 1032 aaPredicted RBP18.59■□□□□ 0.57
DDX41-217ENST00000515562 DRD1P21728 446 aa18.59■□□□□ 0.57
DDX41-217ENST00000515562 NR2F2P24468 414 aa18.59■□□□□ 0.57
DDX41-217ENST00000515562 CNR2P34972 360 aa18.59■□□□□ 0.57
DDX41-217ENST00000515562 GJA4P35212 333 aa18.59■□□□□ 0.57
DDX41-217ENST00000515562 RAP1GAPP47736 663 aa18.59■□□□□ 0.57
DDX41-217ENST00000515562 CACNA2D1P54289 1103 aa18.59■□□□□ 0.57
DDX41-217ENST00000515562 DLG4P78352 724 aa18.59■□□□□ 0.57
DDX41-217ENST00000515562 FSTL4Q6MZW2 842 aa18.59■□□□□ 0.57
DDX41-217ENST00000515562 FAM35AQ86V20 835 aa18.59■□□□□ 0.57
DDX41-217ENST00000515562 LONP2Q86WA8 852 aa18.59■□□□□ 0.57
DDX41-217ENST00000515562 DCLK2Q8N568 766 aa18.59■□□□□ 0.57
DDX41-217ENST00000515562 KIAA1958Q8N8K9 716 aa18.59■□□□□ 0.57
DDX41-217ENST00000515562 PDZD8Q8NEN9 1154 aa18.59■□□□□ 0.57
DDX41-217ENST00000515562 P2RY13Q9BPV8 354 aa18.59■□□□□ 0.57
DDX41-217ENST00000515562 TMEM30AQ9NV96 361 aa18.59■□□□□ 0.57
DDX41-217ENST00000515562 WNT6Q9Y6F9 365 aa18.59■□□□□ 0.57
DDX41-217ENST00000515562 FRYLO94915 3013 aa18.59■□□□□ 0.57
DDX41-217ENST00000515562 GPR179Q6PRD1 2367 aa18.58■□□□□ 0.56
DDX41-217ENST00000515562 CLDN5O00501 218 aa18.58■□□□□ 0.56
DDX41-217ENST00000515562 NFATC1O95644 943 aa18.58■□□□□ 0.56
DDX41-217ENST00000515562 OLFM2O95897 454 aa18.58■□□□□ 0.56
DDX41-217ENST00000515562 ASS1P00966 412 aaKnown RBP18.58■□□□□ 0.56
DDX41-217ENST00000515562 TRIM21P19474 475 aaKnown RBP18.58■□□□□ 0.56
DDX41-217ENST00000515562 RPL13P26373 211 aaKnown RBP18.58■□□□□ 0.56
DDX41-217ENST00000515562 PIK3CAP42336 1068 aa18.58■□□□□ 0.56
DDX41-217ENST00000515562 CDH8P55286 799 aa18.58■□□□□ 0.56
DDX41-217ENST00000515562 SLC7A9P82251 487 aa18.58■□□□□ 0.56
DDX41-217ENST00000515562 ENPEPQ07075 957 aa18.58■□□□□ 0.56
DDX41-217ENST00000515562 TAF10Q12962 218 aa18.58■□□□□ 0.56
DDX41-217ENST00000515562 NR1H3Q13133 447 aa18.58■□□□□ 0.56
DDX41-217ENST00000515562 EML3Q32P44 896 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms