RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 SLC26A9Q7LBE3 791 aa8.8□□□□□ -1
RNF4-220ENST00000513578 ECHDC2Q86YB7 292 aa8.8□□□□□ -1
RNF4-220ENST00000513578 ARFGAP1Q8N6T3 406 aa8.8□□□□□ -1
RNF4-220ENST00000513578 B3GALNT2Q8NCR0 500 aa8.8□□□□□ -1
RNF4-220ENST00000513578 ATL2Q8NHH9 583 aa8.8□□□□□ -1
RNF4-220ENST00000513578 TEKT4Q8WW24 435 aa8.8□□□□□ -1
RNF4-220ENST00000513578 RSPH1Q8WYR4 309 aa8.8□□□□□ -1
RNF4-220ENST00000513578 KHSRPQ92945 711 aaKnown RBP eCLIP8.8□□□□□ -1
RNF4-220ENST00000513578 LRRC45Q96CN5 670 aa8.8□□□□□ -1
RNF4-220ENST00000513578 SENP8Q96LD8 212 aa8.8□□□□□ -1
RNF4-220ENST00000513578 TBCBQ99426 244 aa8.8□□□□□ -1
RNF4-220ENST00000513578 ADAM2Q99965 735 aa8.8□□□□□ -1
RNF4-220ENST00000513578 DUSP16Q9BY84 665 aa8.8□□□□□ -1
RNF4-220ENST00000513578 DCLK3Q9C098 648 aa8.8□□□□□ -1
RNF4-220ENST00000513578 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.8□□□□□ -1
RNF4-220ENST00000513578 DPEP3Q9H4B8 488 aa8.8□□□□□ -1
RNF4-220ENST00000513578 ELAC1Q9H777 363 aaKnown RBP8.8□□□□□ -1
RNF4-220ENST00000513578 GOLGA2P5Q9HBQ8 144 aa8.8□□□□□ -1
RNF4-220ENST00000513578 STARD7Q9NQZ5 370 aa8.8□□□□□ -1
RNF4-220ENST00000513578 TJP2Q9UDY2 1190 aa8.8□□□□□ -1
RNF4-220ENST00000513578 DRG1Q9Y295 367 aaKnown RBP8.8□□□□□ -1
RNF4-220ENST00000513578 USTQ9Y2C2 406 aa8.8□□□□□ -1
RNF4-220ENST00000513578 PTCH2Q9Y6C5 1203 aa8.8□□□□□ -1
RNF4-220ENST00000513578 hCG_1818297A0A087WSY0 165 aa8.79□□□□□ -1
RNF4-220ENST00000513578 C3orf70A6NLC5 250 aaPredicted RBP8.79□□□□□ -1
RNF4-220ENST00000513578 MEIS3P2A8K0S8 358 aa8.79□□□□□ -1
RNF4-220ENST00000513578 KBTBD13C9JR72 458 aa8.79□□□□□ -1
RNF4-220ENST00000513578 TMEM189-UBE2V1I3L0A0 370 aa8.79□□□□□ -1
RNF4-220ENST00000513578 PAPSS1O43252 624 aaPredicted RBP8.79□□□□□ -1
RNF4-220ENST00000513578 DAPK3O43293 454 aa8.79□□□□□ -1
RNF4-220ENST00000513578 GABBR2O75899 941 aa8.79□□□□□ -1
RNF4-220ENST00000513578 ECEL1O95672 775 aa8.79□□□□□ -1
RNF4-220ENST00000513578 TRUB2O95900 331 aaKnown RBP8.79□□□□□ -1
RNF4-220ENST00000513578 KRT1P04264 644 aa8.79□□□□□ -1
RNF4-220ENST00000513578 RALAP11233 206 aa8.79□□□□□ -1
RNF4-220ENST00000513578 DESP17661 470 aa8.79□□□□□ -1
RNF4-220ENST00000513578 PTPN1P18031 435 aaKnown RBP8.79□□□□□ -1
RNF4-220ENST00000513578 TYMPP19971 482 aa8.79□□□□□ -1
RNF4-220ENST00000513578 CDKN2BP42772 138 aa8.79□□□□□ -1
RNF4-220ENST00000513578 TNNT3P45378 269 aaPredicted RBP8.79□□□□□ -1
RNF4-220ENST00000513578 SCNN1GP51170 649 aa8.79□□□□□ -1
RNF4-220ENST00000513578 CLCNKBP51801 687 aa8.79□□□□□ -1
RNF4-220ENST00000513578 BFSP2Q13515 415 aa8.79□□□□□ -1
RNF4-220ENST00000513578 PTK6Q13882 451 aa8.79□□□□□ -1
RNF4-220ENST00000513578 BOLA3Q53S33 107 aa8.79□□□□□ -1
RNF4-220ENST00000513578 TFDP3Q5H9I0 405 aa8.79□□□□□ -1
RNF4-220ENST00000513578 FAM102AQ5T9C2 384 aaPredicted RBP8.79□□□□□ -1
RNF4-220ENST00000513578 OR6B2Q6IFH4 312 aa8.79□□□□□ -1
RNF4-220ENST00000513578 DCLRE1AQ6PJP8 1040 aa8.79□□□□□ -1
RNF4-220ENST00000513578 MFSD7Q6UXD7 560 aa8.79□□□□□ -1
RNF4-220ENST00000513578 CD300LGQ6UXG3 332 aa8.79□□□□□ -1
RNF4-220ENST00000513578 SLC24A5Q71RS6 500 aa8.79□□□□□ -1
RNF4-220ENST00000513578 GSPT2Q8IYD1 628 aaKnown RBP8.79□□□□□ -1
RNF4-220ENST00000513578 IQCKQ8N0W5 287 aa8.79□□□□□ -1
RNF4-220ENST00000513578 SCML4Q8N228 414 aa8.79□□□□□ -1
RNF4-220ENST00000513578 TTC13Q8NBP0 860 aa8.79□□□□□ -1
RNF4-220ENST00000513578 FAM71BQ8TC56 605 aa8.79□□□□□ -1
RNF4-220ENST00000513578 RXFP2Q8WXD0 754 aa8.79□□□□□ -1
RNF4-220ENST00000513578 IFT81Q8WYA0 676 aa8.79□□□□□ -1
RNF4-220ENST00000513578 CENPIQ92674 756 aaPredicted RBP8.79□□□□□ -1
RNF4-220ENST00000513578 LPPQ93052 612 aa8.79□□□□□ -1
RNF4-220ENST00000513578 NKD2Q969F2 451 aaPredicted RBP8.79□□□□□ -1
RNF4-220ENST00000513578 HERPUD2Q9BSE4 406 aa8.79□□□□□ -1
RNF4-220ENST00000513578 C11orf84Q9BUA3 381 aaPredicted RBP8.79□□□□□ -1
RNF4-220ENST00000513578 TXLNGYQ9BZA5 131 aa8.79□□□□□ -1
RNF4-220ENST00000513578 OSBPL7Q9BZF2 842 aa8.79□□□□□ -1
RNF4-220ENST00000513578 PAK6Q9NQU5 681 aaPredicted RBP8.79□□□□□ -1
RNF4-220ENST00000513578 ZDHHC18Q9NUE0 388 aa8.79□□□□□ -1
RNF4-220ENST00000513578 WHRNQ9P202 907 aa8.79□□□□□ -1
RNF4-220ENST00000513578 DSEQ9UL01 958 aa8.79□□□□□ -1
RNF4-220ENST00000513578 CDH9Q9ULB4 789 aa8.79□□□□□ -1
RNF4-220ENST00000513578 NEU2Q9Y3R4 380 aa8.79□□□□□ -1
RNF4-220ENST00000513578 A0A0C4DFX4 3053 aa8.79□□□□□ -1
RNF4-220ENST00000513578 ESYT3A0FGR9 886 aa8.78□□□□□ -1
RNF4-220ENST00000513578 SPDYE4A6NLX3 237 aa8.78□□□□□ -1
RNF4-220ENST00000513578 NDC80O14777 642 aa8.78□□□□□ -1
RNF4-220ENST00000513578 MDM4O15151 490 aa8.78□□□□□ -1
RNF4-220ENST00000513578 OPA1O60313 960 aa8.78□□□□□ -1
RNF4-220ENST00000513578 PARNO95453 639 aaKnown RBP8.78□□□□□ -1
RNF4-220ENST00000513578 GAS8O95995 478 aa8.78□□□□□ -1
RNF4-220ENST00000513578 PDGFRBP09619 1106 aa8.78□□□□□ -1
RNF4-220ENST00000513578 ODC1P11926 461 aa8.78□□□□□ -1
RNF4-220ENST00000513578 TCF4P15884 667 aa8.78□□□□□ -1
RNF4-220ENST00000513578 SELPP16109 830 aa8.78□□□□□ -1
RNF4-220ENST00000513578 PDGFRAP16234 1089 aa8.78□□□□□ -1
RNF4-220ENST00000513578 NPR3P17342 541 aa8.78□□□□□ -1
RNF4-220ENST00000513578 ITIH2P19823 946 aa8.78□□□□□ -1
RNF4-220ENST00000513578 KDELR1P24390 212 aa8.78□□□□□ -1
RNF4-220ENST00000513578 PCSK1P29120 753 aa8.78□□□□□ -1
RNF4-220ENST00000513578 MIPP30301 263 aa8.78□□□□□ -1
RNF4-220ENST00000513578 SSR1P43307 286 aaKnown RBP8.78□□□□□ -1
RNF4-220ENST00000513578 ARSEP51690 589 aa8.78□□□□□ -1
RNF4-220ENST00000513578 SLC8A3P57103 927 aa8.78□□□□□ -1
RNF4-220ENST00000513578 CAV1Q03135 178 aa8.78□□□□□ -1
RNF4-220ENST00000513578 MTMR3Q13615 1198 aa8.78□□□□□ -1
RNF4-220ENST00000513578 MBTPS1Q14703 1052 aa8.78□□□□□ -1
RNF4-220ENST00000513578 PDK2Q15119 407 aa8.78□□□□□ -1
RNF4-220ENST00000513578 TRADDQ15628 312 aa8.78□□□□□ -1
RNF4-220ENST00000513578 CCDC14Q49A88 953 aa8.78□□□□□ -1
RNF4-220ENST00000513578 EFHC1Q5JVL4 640 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms