RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.1■□□□□ 0.49
HDAC6-235ENST00000495515 MTCL1Q9Y4B5 1905 aaKnown RBP18.1■□□□□ 0.49
HDAC6-235ENST00000495515 BRWD1Q9NSI6 2320 aa18.09■□□□□ 0.49
HDAC6-235ENST00000495515 SETSIPP0DME0 302 aa18.09■□□□□ 0.49
HDAC6-235ENST00000495515 MYL4P12829 197 aa18.09■□□□□ 0.49
HDAC6-235ENST00000495515 FSHRP23945 695 aa18.09■□□□□ 0.49
HDAC6-235ENST00000495515 CDC25CP30307 473 aa18.09■□□□□ 0.49
HDAC6-235ENST00000495515 PDE6CP51160 858 aa18.09■□□□□ 0.49
HDAC6-235ENST00000495515 EPHA5P54756 1037 aa18.09■□□□□ 0.49
HDAC6-235ENST00000495515 JAM2P57087 298 aa18.09■□□□□ 0.49
HDAC6-235ENST00000495515 BST2Q10589 180 aaKnown RBP18.09■□□□□ 0.49
HDAC6-235ENST00000495515 CLEC20AQ6ZU45 233 aa18.09■□□□□ 0.49
HDAC6-235ENST00000495515 NUP93Q8N1F7 819 aa18.09■□□□□ 0.49
HDAC6-235ENST00000495515 ZNF606Q8WXB4 792 aa18.09■□□□□ 0.49
HDAC6-235ENST00000495515 TFAP2BQ92481 460 aa18.09■□□□□ 0.49
HDAC6-235ENST00000495515 TRMT2BQ96GJ1 504 aaKnown RBP18.09■□□□□ 0.49
HDAC6-235ENST00000495515 KCNK16Q96T55 309 aa18.09■□□□□ 0.49
HDAC6-235ENST00000495515 PHF7Q9BWX1 381 aaPredicted RBP18.09■□□□□ 0.49
HDAC6-235ENST00000495515 UBXN6Q9BZV1 441 aa18.09■□□□□ 0.49
HDAC6-235ENST00000495515 TRIM5Q9C035 493 aa18.09■□□□□ 0.49
HDAC6-235ENST00000495515 HCFC1R1Q9NWW0 138 aa18.09■□□□□ 0.49
HDAC6-235ENST00000495515 COMMD8Q9NX08 183 aa18.09■□□□□ 0.49
HDAC6-235ENST00000495515 MAGED2Q9UNF1 606 aaPredicted RBP18.09■□□□□ 0.49
HDAC6-235ENST00000495515 MRPS23Q9Y3D9 190 aaKnown RBP18.09■□□□□ 0.49
HDAC6-235ENST00000495515 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.09■□□□□ 0.492e-8■■■□□ 18.4
HDAC6-235ENST00000495515 ITIH6Q6UXX5 1313 aa18.08■□□□□ 0.49
HDAC6-235ENST00000495515 M0QYV0 167 aa18.08■□□□□ 0.48
HDAC6-235ENST00000495515 MICAL2O94851 1124 aa18.08■□□□□ 0.48
HDAC6-235ENST00000495515 CLCN1P35523 988 aa18.08■□□□□ 0.48
HDAC6-235ENST00000495515 KRT9P35527 623 aa18.08■□□□□ 0.48
HDAC6-235ENST00000495515 PBX1P40424 430 aa18.08■□□□□ 0.48
HDAC6-235ENST00000495515 CACNA2D1P54289 1103 aa18.08■□□□□ 0.48
HDAC6-235ENST00000495515 OTOP3Q7RTS5 596 aa18.08■□□□□ 0.48
HDAC6-235ENST00000495515 ZNF397Q8NF99 534 aaPredicted RBP18.08■□□□□ 0.48
HDAC6-235ENST00000495515 MYRFLQ96LU7 910 aa18.08■□□□□ 0.48
HDAC6-235ENST00000495515 PDCL3Q9H2J4 239 aa18.08■□□□□ 0.48
HDAC6-235ENST00000495515 FBXO44Q9H4M3 255 aa18.08■□□□□ 0.48
HDAC6-235ENST00000495515 POMKQ9H5K3 350 aa18.08■□□□□ 0.48
HDAC6-235ENST00000495515 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.08■□□□□ 0.48
HDAC6-235ENST00000495515 CDH22Q9UJ99 828 aa18.08■□□□□ 0.48
HDAC6-235ENST00000495515 NR2E1Q9Y466 385 aa18.08■□□□□ 0.48
HDAC6-235ENST00000495515 XPO1O14980 1071 aaKnown RBP18.07■□□□□ 0.48
HDAC6-235ENST00000495515 BEST1O76090 585 aa18.07■□□□□ 0.48
HDAC6-235ENST00000495515 GFPT2O94808 682 aa18.07■□□□□ 0.48
HDAC6-235ENST00000495515 PNMA6AP0CW24 399 aaPredicted RBP18.07■□□□□ 0.48
HDAC6-235ENST00000495515 HMGA1P17096 107 aaKnown RBP18.07■□□□□ 0.48
HDAC6-235ENST00000495515 YWHAQP27348 245 aa18.07■□□□□ 0.48
HDAC6-235ENST00000495515 KCNQ1P51787 676 aa18.07■□□□□ 0.48
HDAC6-235ENST00000495515 NTHL1P78549 312 aa18.07■□□□□ 0.48
HDAC6-235ENST00000495515 PTPN21Q16825 1174 aa18.07■□□□□ 0.48
HDAC6-235ENST00000495515 TJAP1Q5JTD0 557 aa18.07■□□□□ 0.48
HDAC6-235ENST00000495515 SPECC1LQ69YQ0 1117 aa18.07■□□□□ 0.48
HDAC6-235ENST00000495515 SLC47A2Q86VL8 602 aa18.07■□□□□ 0.48
HDAC6-235ENST00000495515 TTC30AQ86WT1 665 aa18.07■□□□□ 0.48
HDAC6-235ENST00000495515 HS6ST3Q8IZP7 471 aa18.07■□□□□ 0.48
HDAC6-235ENST00000495515 ZMIZ2Q8NF64 920 aa18.07■□□□□ 0.48
HDAC6-235ENST00000495515 ACSF2Q96CM8 615 aaPredicted RBP18.07■□□□□ 0.48
HDAC6-235ENST00000495515 SLITRK1Q96PX8 696 aa18.07■□□□□ 0.48
HDAC6-235ENST00000495515 NUCKS1Q9H1E3 243 aaKnown RBP18.07■□□□□ 0.48
HDAC6-235ENST00000495515 TMEM30AQ9NV96 361 aa18.07■□□□□ 0.48
HDAC6-235ENST00000495515 PRKAG3Q9UGI9 489 aa18.07■□□□□ 0.48
HDAC6-235ENST00000495515 USTQ9Y2C2 406 aa18.07■□□□□ 0.48
HDAC6-235ENST00000495515 CEP83Q9Y592 693 aa18.07■□□□□ 0.48
HDAC6-235ENST00000495515 ZFP37Q9Y6Q3 630 aaPredicted RBP18.07■□□□□ 0.48
HDAC6-235ENST00000495515 A0A0C4DFX4 3053 aa18.07■□□□□ 0.48
HDAC6-235ENST00000495515 A0A1W2PQJ5 194 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 TPM1P09493 284 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 IL9P15248 144 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 CYP11B1P15538 503 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 FERP16591 822 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 GABRR2P28476 465 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 PPP3CCP48454 512 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 SLC5A3P53794 718 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 PDE4CQ08493 712 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 MTMR3Q13615 1198 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 TRIM14Q14142 442 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 PKDCCQ504Y2 493 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 ARHGAP15Q53QZ3 475 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 GET4Q7L5D6 327 aaPredicted RBP18.06■□□□□ 0.48
HDAC6-235ENST00000495515 PIGZQ86VD9 579 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 ZNF677Q86XU0 584 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 TMC8Q8IU68 726 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 PDZD8Q8NEN9 1154 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 UBA3Q8TBC4 463 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 FEZF2Q8TBJ5 459 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 ZSWIM1Q9BR11 485 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 TTLL2Q9BWV7 592 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 LRRC3Q9BY71 257 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 ATXN3LQ9H3M9 355 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 LRRC4Q9HBW1 653 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 ACP6Q9NPH0 428 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 ZMYM5Q9UJ78 669 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 PCDHGC3Q9UN70 934 aa18.06■□□□□ 0.48
HDAC6-235ENST00000495515 TNFRSF10BO14763 440 aa18.05■□□□□ 0.48
HDAC6-235ENST00000495515 CALCAP01258 141 aa18.05■□□□□ 0.48
HDAC6-235ENST00000495515 GBP2P32456 591 aaPredicted RBP18.05■□□□□ 0.48
HDAC6-235ENST00000495515 PLA2G4AP47712 749 aa18.05■□□□□ 0.48
HDAC6-235ENST00000495515 IFRD2Q12894 506 aaPredicted RBP18.05■□□□□ 0.48
HDAC6-235ENST00000495515 PRSS36Q5K4E3 855 aa18.05■□□□□ 0.48
HDAC6-235ENST00000495515 VSTM4Q8IW00 320 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms