RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CCDC62Q6P9F0 684 aa17.33■□□□□ 0.36
CCDC88B-210ENST00000494566 ALLCQ8N6M5 410 aa17.33■□□□□ 0.36
CCDC88B-210ENST00000494566 OPTNQ96CV9 577 aa17.33■□□□□ 0.36
CCDC88B-210ENST00000494566 PIWIL1Q96J94 861 aaKnown RBP17.33■□□□□ 0.36
CCDC88B-210ENST00000494566 ELOVL4Q9GZR5 314 aa17.33■□□□□ 0.36
CCDC88B-210ENST00000494566 IFT122Q9HBG6 1241 aa17.33■□□□□ 0.36
CCDC88B-210ENST00000494566 CST8O60676 142 aa17.32■□□□□ 0.36
CCDC88B-210ENST00000494566 LSM8O95777 96 aaKnown RBP17.32■□□□□ 0.36
CCDC88B-210ENST00000494566 ATP2A2P16615 1042 aaKnown RBP17.32■□□□□ 0.36
CCDC88B-210ENST00000494566 ADRA1DP25100 572 aa17.32■□□□□ 0.36
CCDC88B-210ENST00000494566 CCNHP51946 323 aaPredicted RBP17.32■□□□□ 0.36
CCDC88B-210ENST00000494566 OTUD4Q01804 1114 aaKnown RBP17.32■□□□□ 0.36
CCDC88B-210ENST00000494566 TAF1BQ53T94 588 aaPredicted RBP17.32■□□□□ 0.36
CCDC88B-210ENST00000494566 ANKRD22Q5VYY1 191 aa17.32■□□□□ 0.36
CCDC88B-210ENST00000494566 RFWD3Q6PCD5 774 aa17.32■□□□□ 0.36
CCDC88B-210ENST00000494566 LVRNQ6Q4G3 990 aa17.32■□□□□ 0.36
CCDC88B-210ENST00000494566 CCDC33Q8N5R6 958 aa17.32■□□□□ 0.36
CCDC88B-210ENST00000494566 ACTL9Q8TC94 416 aa17.32■□□□□ 0.36
CCDC88B-210ENST00000494566 DTX3LQ8TDB6 740 aa17.32■□□□□ 0.36
CCDC88B-210ENST00000494566 KCNN1Q92952 543 aa17.32■□□□□ 0.36
CCDC88B-210ENST00000494566 LRRC37BQ96QE4 947 aa17.32■□□□□ 0.36
CCDC88B-210ENST00000494566 MAK16Q9BXY0 300 aaKnown RBP17.32■□□□□ 0.36
CCDC88B-210ENST00000494566 RNF181Q9P0P0 153 aa17.32■□□□□ 0.36
CCDC88B-210ENST00000494566 GCAP28676 217 aa17.32■□□□□ 0.36
CCDC88B-210ENST00000494566 AP3M2P53677 418 aa17.32■□□□□ 0.36
CCDC88B-210ENST00000494566 TFDP1Q14186 410 aa17.32■□□□□ 0.36
CCDC88B-210ENST00000494566 MTFR1Q15390 333 aa17.32■□□□□ 0.36
CCDC88B-210ENST00000494566 MTDHQ86UE4 582 aaKnown RBP17.32■□□□□ 0.36
CCDC88B-210ENST00000494566 ZCCHC9Q8N567 271 aaKnown RBP17.32■□□□□ 0.36
CCDC88B-210ENST00000494566 CCDC77Q9BR77 488 aa17.32■□□□□ 0.36
CCDC88B-210ENST00000494566 CCDC134Q9H6E4 229 aa17.32■□□□□ 0.36
CCDC88B-210ENST00000494566 M0QYV0 167 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 EIF4BP23588 611 aaKnown RBP17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 POLR2BP30876 1174 aaKnown RBP17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 GCLCP48506 637 aaPredicted RBP17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 CAV1Q03135 178 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 OASLQ15646 514 aaKnown RBP17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 CDO1Q16878 200 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 ERO1BQ86YB8 467 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 SLC4A11Q8NBS3 891 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 LRRC8CQ8TDW0 803 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 FBF1Q8TES7 1133 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 MAGEB18Q96M61 343 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 C2orf40Q9H1Z8 148 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 EBF2Q9HAK2 575 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 ADARB2Q9NS39 739 aaKnown RBP17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 C3orf70A6NLC5 250 aaPredicted RBP17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 ATP5DP30049 168 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 VCPP55072 806 aaKnown RBP17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 SLC25A11Q02978 314 aaKnown RBP17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 TMEM62Q0P6H9 643 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 MMRN1Q13201 1228 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 PIGHQ14442 188 aaPredicted RBP17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 SETDB1Q15047 1291 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 SEPT7Q16181 437 aaKnown RBP17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 PLPPR4Q7Z2D5 763 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 C12orf29Q8N999 325 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 FAXDC2Q96IV6 333 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 TRIM6Q9C030 488 aaPredicted RBP17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 ARHGEF3Q9NR81 526 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 TCRBV7S3A2A0A539 114 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 CFAP69A5D8W1 941 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 F5H423 210 aaPredicted RBP17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 B4GALT4O60513 344 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 C22orf31O95567 290 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 MAP1SQ66K74 1059 aaPredicted RBP17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 NPNTQ6UXI9 565 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 CROCCP2Q86T23 111 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 RFWD2Q8NHY2 731 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 SMC6Q96SB8 1091 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 CALN1Q9BXU9 219 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 SMARCAD1Q9H4L7 1026 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 PRKAG3Q9UGI9 489 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 PCDHGC3Q9UN70 934 aa17.31■□□□□ 0.36
CCDC88B-210ENST00000494566 MICAL2O94851 1124 aa17.3■□□□□ 0.36
CCDC88B-210ENST00000494566 UNC5CO95185 931 aa17.3■□□□□ 0.36
CCDC88B-210ENST00000494566 PCK1P35558 622 aa17.3■□□□□ 0.36
CCDC88B-210ENST00000494566 ABL2P42684 1182 aa17.3■□□□□ 0.36
CCDC88B-210ENST00000494566 BBS9Q3SYG4 887 aa17.3■□□□□ 0.36
CCDC88B-210ENST00000494566 MSS51Q4VC12 460 aa17.3■□□□□ 0.36
CCDC88B-210ENST00000494566 XYLT1Q86Y38 959 aa17.3■□□□□ 0.36
CCDC88B-210ENST00000494566 CDCA5Q96FF9 252 aa17.3■□□□□ 0.36
CCDC88B-210ENST00000494566 NUDCD1Q96RS6 583 aa17.3■□□□□ 0.36
CCDC88B-210ENST00000494566 SLC17A7Q9P2U7 560 aa17.3■□□□□ 0.36
CCDC88B-210ENST00000494566 DNAJC25-GNG10A0A024R161 153 aa17.3■□□□□ 0.36
CCDC88B-210ENST00000494566 RGS7P49802 495 aa17.3■□□□□ 0.36
CCDC88B-210ENST00000494566 GRM1Q13255 1194 aa17.3■□□□□ 0.36
CCDC88B-210ENST00000494566 MOGSQ13724 837 aa17.3■□□□□ 0.36
CCDC88B-210ENST00000494566 HEXIM2Q96MH2 286 aaKnown RBP17.3■□□□□ 0.36
CCDC88B-210ENST00000494566 TBC1D10AQ9BXI6 508 aa17.3■□□□□ 0.36
CCDC88B-210ENST00000494566 FBXO6Q9NRD1 293 aaPredicted RBP17.3■□□□□ 0.36
CCDC88B-210ENST00000494566 TRIP11Q15643 1979 aa17.29■□□□□ 0.36
CCDC88B-210ENST00000494566 YWHAEP62258 255 aaKnown RBP17.29■□□□□ 0.36
CCDC88B-210ENST00000494566 PTPN11Q06124 597 aaPredicted RBP17.29■□□□□ 0.36
CCDC88B-210ENST00000494566 C15orf59Q2T9L4 293 aaPredicted RBP17.29■□□□□ 0.36
CCDC88B-210ENST00000494566 ARMCX2Q7L311 632 aa17.29■□□□□ 0.36
CCDC88B-210ENST00000494566 TRABD2AQ86V40 505 aa17.29■□□□□ 0.36
CCDC88B-210ENST00000494566 ANKRD13AQ8IZ07 590 aa17.29■□□□□ 0.36
CCDC88B-210ENST00000494566 LPIN3Q9BQK8 851 aa17.29■□□□□ 0.36
CCDC88B-210ENST00000494566 HBP1O60381 514 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms