RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 UBALD2Q8IYN6 164 aa17.25■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 SLC44A3Q8N4M1 653 aa17.25■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 ZMIZ2Q8NF64 920 aa17.25■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 MRPS31Q92665 395 aaKnown RBP17.25■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 EDAQ92838 391 aa17.25■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 SMARCD2Q92925 531 aa17.25■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 FAM81BQ96LP2 452 aa17.25■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 KREMEN1Q96MU8 473 aa17.25■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 KXD1Q9BQD3 176 aa17.25■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 TASP1Q9H6P5 420 aa17.25■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 UBE2TQ9NPD8 197 aaPredicted RBP17.25■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 APEX2Q9UBZ4 518 aa17.25■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 DUSP12Q9UNI6 340 aa17.25■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 TTC28Q96AY4 2481 aa17.24■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 GREB1Q4ZG55 1949 aa17.24■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 ECI2O75521 394 aa17.24■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 BEST1O76090 585 aa17.24■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 RTN3O95197 1032 aaPredicted RBP17.24■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 PAEPP09466 180 aa17.24■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 FCARP24071 287 aa17.24■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 SLC5A3P53794 718 aa17.24■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 MFAP3P55082 362 aa17.24■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 NCAPHQ15003 741 aa17.24■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 SGO2Q562F6 1265 aa17.24■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 CLEC20AQ6ZU45 233 aa17.24■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 NUP93Q8N1F7 819 aa17.24■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 RBBP8NLQ8NC74 664 aaPredicted RBP17.24■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 ANKRD20A12PQ8NF67 263 aa17.24■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 JAKMIP2Q96AA8 810 aa17.24■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 ELSPBP1Q96BH3 223 aa17.24■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 RPP25Q9BUL9 199 aaKnown RBP17.24■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 SMOC2Q9H3U7 446 aa17.24■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 TRPV4Q9HBA0 871 aa17.24■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 ZFP14Q9HCL3 533 aa17.24■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 ZMYM5Q9UJ78 669 aa17.24■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 OBSL1O75147 1896 aa17.24■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 TNFRSF10BO14763 440 aa17.23■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 VDRP11473 427 aa17.23■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 CD19P15391 556 aa17.23■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 NPR3P17342 541 aa17.23■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 YWHAQP27348 245 aa17.23■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 IFRD2Q12894 506 aaPredicted RBP17.23■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 TANGO2Q6ICL3 276 aa17.23■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 GJB7Q6PEY0 223 aa17.23■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 VPS16Q9H269 839 aa17.23■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 PNPLA8Q9NP80 782 aa17.23■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 COMMD8Q9NX08 183 aa17.23■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 TRPM5Q9NZQ8 1165 aa17.23■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 KIAA1257Q9ULG3 409 aa17.23■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 PATJQ8NI35 1801 aa17.23■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 NUP210Q8TEM1 1887 aaPredicted RBP17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 SOBPA7XYQ1 873 aa17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 SMTNL1A8MU46 457 aa17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 NARSO43776 548 aaKnown RBP17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 SRFP11831 508 aa17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 ZNF18P17022 549 aa17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 CDK11BP21127 795 aaKnown RBP17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 WEE1P30291 646 aa17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 PPP3CCP48454 512 aa17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 ZNF165P49910 485 aa17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 ZNF132P52740 706 aa17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 APBA1Q02410 837 aa17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 SIGLEC14Q08ET2 396 aa17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 TAF10Q12962 218 aa17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 GOLGA7BQ2TAP0 167 aa17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 ZSCAN23Q3MJ62 389 aa17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 TXNDC8Q6A555 127 aa17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 ARID3BQ8IVW6 561 aaPredicted RBP17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 DHX40Q8IX18 779 aaKnown RBP17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 MAB21L3Q8N8X9 362 aa17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 FBXO32Q969P5 355 aa17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 SLITRK1Q96PX8 696 aa17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 SLC46A2Q9BY10 475 aa17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 DUSP16Q9BY84 665 aa17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 PLA2G2FQ9BZM2 168 aa17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 HSD3B7Q9H2F3 369 aa17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 SIX2Q9NPC8 291 aa17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 LIMA1Q9UHB6 759 aaKnown RBP17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 TSPAN16Q9UKR8 245 aa17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 CNTN6Q9UQ52 1028 aa17.22■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 DENND4CQ5VZ89 1909 aa17.21■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 HHLA1C9JL84 531 aa17.21■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 RNF225M0QZC1 329 aaPredicted RBP17.21■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 KRT5P13647 590 aa17.21■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 AVPR1AP37288 418 aa17.21■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 COPB1P53618 953 aaKnown RBP17.21■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 BCAT1P54687 386 aa17.21■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 SLC8A3P57103 927 aa17.21■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 KCNMA1Q12791 1236 aa17.21■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 ARHGAP44Q17R89 818 aa17.21■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 FKBP15Q5T1M5 1219 aa17.21■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 TRIM67Q6ZTA4 783 aa17.21■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 MON1AQ86VX9 555 aa17.21■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 CMTM8Q8IZV2 173 aa17.21■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 ANKRD52Q8NB46 1076 aa17.21■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 PDZD8Q8NEN9 1154 aa17.21■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 SCAMP5Q8TAC9 235 aa17.21■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 OVCA2Q8WZ82 227 aa17.21■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 E2F7Q96AV8 911 aa17.21■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 C1QTNF1Q9BXJ1 281 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms