RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 FBXO25Q8TCJ0 367 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 USP33Q8TEY7 942 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 DNAJB3Q8WWF6 145 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 TMEM176AQ96HP8 235 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 NAF1Q96HR8 494 aaKnown RBP11.49□□□□□ -0.57
HDAC6-228ENST00000486227 PDGFDQ9GZP0 370 aaPredicted RBP11.49□□□□□ -0.57
HDAC6-228ENST00000486227 ZC3H7BQ9UGR2 993 aaKnown RBP11.49□□□□□ -0.57
HDAC6-228ENST00000486227 FAM153AQ9UHL3 310 aa11.49□□□□□ -0.57
HDAC6-228ENST00000486227 SMG5Q9UPR3 1016 aaKnown RBP11.49□□□□□ -0.57
HDAC6-228ENST00000486227 HMBSP08397 361 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 NCAM1P13591 858 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 TYK2P29597 1187 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 ALDH1A3P47895 512 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 KRT33BQ14525 404 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 ANO5Q75V66 913 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 MREGQ8N565 214 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 IFT43Q96FT9 208 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 FAM161BQ96MY7 647 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 ZNF518BQ9C0D4 1074 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 GANQ9H2C0 597 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 KIAA1257Q9ULG3 409 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 TCHHQ07283 1943 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 ROBO1Q9Y6N7 1651 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 CCDC78A2IDD5 438 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 CFAP69A5D8W1 941 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 EEF2KO00418 725 aaKnown RBP11.48□□□□□ -0.57
HDAC6-228ENST00000486227 HOXC6P09630 235 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 ACO1P21399 889 aaKnown RBP11.48□□□□□ -0.57
HDAC6-228ENST00000486227 RFC1P35251 1148 aaPredicted RBP11.48□□□□□ -0.57
HDAC6-228ENST00000486227 C1orf146Q5VVC0 180 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 STKLD1Q8NE28 680 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.48□□□□□ -0.57
HDAC6-228ENST00000486227 CCDC22O60826 627 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 PQBP1O60828 265 aaKnown RBP11.48□□□□□ -0.57
HDAC6-228ENST00000486227 CALCAP01258 141 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 KITP10721 976 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 C3orf62Q6ZUJ4 267 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 TLK2Q86UE8 772 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 CAMKK2Q96RR4 588 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 DYRK4Q9NR20 520 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 NR2E3Q9Y5X4 410 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 COL1A1P02452 1464 aaPredicted RBP11.48□□□□□ -0.57
HDAC6-228ENST00000486227 MSCO60682 206 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 CAND2O75155 1236 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 UBOX5O94941 541 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 LGALS2P05162 132 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 MCF2P10911 925 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 PBX1P40424 430 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 PRKCIP41743 596 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 ESRRGP62508 458 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 ZNF844Q08AG5 666 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 NBPF20Q3BBV1 942 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 TREML2Q5T2D2 321 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 GJC2Q5T442 439 aaPredicted RBP11.48□□□□□ -0.57
HDAC6-228ENST00000486227 KLC3Q6P597 504 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 GPATCH2LQ9NWQ4 482 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 PAK5Q9P286 719 aa11.48□□□□□ -0.57
HDAC6-228ENST00000486227 FAM47DPA6NHR8 397 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 SPATA31C2B4DYI2 1134 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 ANKRD20A4Q4UJ75 823 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 COBLL1Q53SF7 1204 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 ANKRD20A2Q5SQ80 823 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 CELF3Q5SZQ8 465 aaKnown RBP11.47□□□□□ -0.57
HDAC6-228ENST00000486227 FAXCQ5TGI0 409 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 ANKRD20A1Q5TYW2 823 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 CRELD2Q6UXH1 353 aaPredicted RBP11.47□□□□□ -0.57
HDAC6-228ENST00000486227 NUDCD3Q8IVD9 361 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 PPP1R13LQ8WUF5 828 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 SLITRK1Q96PX8 696 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 CYP3A43Q9HB55 503 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 TAS2R14Q9NYV8 317 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 PPME1Q9Y570 386 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 LRRC37A3O60309 1634 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 CYB561D2O14569 222 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 SKAP2O75563 359 aaPredicted RBP11.47□□□□□ -0.57
HDAC6-228ENST00000486227 MX2P20592 715 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 AKAP5P24588 427 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 VHLP40337 213 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 ACVR2BQ13705 512 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 IQSEC1Q6DN90 963 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 C11orf63Q6NUN7 778 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 NT5DC3Q86UY8 548 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 FOXP3Q9BZS1 431 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 TMEM39AQ9NV64 488 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.47□□□□□ -0.57
HDAC6-228ENST00000486227 TMEM88BA6NKF7 163 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 LACTBL1A8MY62 500 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 AP1G2O75843 785 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 LSM8O95777 96 aaKnown RBP11.47□□□□□ -0.57
HDAC6-228ENST00000486227 CCNE2O96020 404 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 RGPD1P0DJD0 1748 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 STX1BP61266 288 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 ELF3P78545 371 aaPredicted RBP11.47□□□□□ -0.57
HDAC6-228ENST00000486227 POU5F1BQ06416 359 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 MAPRE1Q15691 268 aaKnown RBP11.47□□□□□ -0.57
HDAC6-228ENST00000486227 TAF2Q6P1X5 1199 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 EPS8L1Q8TE68 723 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 ASIC4Q96FT7 647 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 FAM84AQ96KN4 292 aa11.47□□□□□ -0.57
HDAC6-228ENST00000486227 SERPINB12Q96P63 405 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms